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BCORP1 (BCL6 corepressor pseudogene 1)

Identity

Alias_namesBCORL2
BCL6 co-repressor-like 2
BCL6 corepressor-like 2
Alias_symbol (synonym)FLJ39821
Other alias
HGNC (Hugo) BCORP1
LocusID (NCBI) 286554
Atlas_Id 43167
Location Yq11.222  [Link to chromosome band Yq11]
Location_base_pair Starts at 19455431 and ends at 19503153 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCORP1   23953
Cards
Entrez_Gene (NCBI)BCORP1  286554  BCL6 corepressor pseudogene 1
AliasesBCORL2
GeneCards (Weizmann)BCORP1
Ensembl hg19 (Hinxton)ENSG00000215580 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000215580 [Gene_View]  chrY:19455431-19503153 [Contig_View]  BCORP1 [Vega]
ICGC DataPortalENSG00000215580
TCGA cBioPortalBCORP1
AceView (NCBI)BCORP1
Genatlas (Paris)BCORP1
WikiGenes286554
SOURCE (Princeton)BCORP1
Genetics Home Reference (NIH)BCORP1
Genomic and cartography
GoldenPath hg38 (UCSC)BCORP1  -     chrY:19455431-19503153 -  Yq11.222   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BCORP1  -     Yq11.222   [Description]    (hg19-Feb_2009)
EnsemblBCORP1 - Yq11.222 [CytoView hg19]  BCORP1 - Yq11.222 [CytoView hg38]
Mapping of homologs : NCBIBCORP1 [Mapview hg19]  BCORP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097140 AK303164 BC063452 BC110520 BC110521
RefSeq transcript (Entrez)NM_001173413 NM_173700
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BCORP1
Cluster EST : UnigeneHs.211713 [ NCBI ]
CGAP (NCI)Hs.211713
Alternative Splicing GalleryENSG00000215580
Gene ExpressionBCORP1 [ NCBI-GEO ]   BCORP1 [ EBI - ARRAY_EXPRESS ]   BCORP1 [ SEEK ]   BCORP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BCORP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)286554
GTEX Portal (Tissue expression)BCORP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N888   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N888  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N888
Splice isoforms : SwissVarQ8N888
PhosPhoSitePlusQ8N888
Domains : Interpro (EBI)BCOR   
Domain families : Pfam (Sanger)BCOR (PF15808)   
Domain families : Pfam (NCBI)pfam15808   
Conserved Domain (NCBI)BCORP1
DMDM Disease mutations286554
Blocks (Seattle)BCORP1
SuperfamilyQ8N888
Human Protein AtlasENSG00000215580
Peptide AtlasQ8N888
HPRD08266
IPIIPI00167397   IPI00909785   
Protein Interaction databases
DIP (DOE-UCLA)Q8N888
IntAct (EBI)Q8N888
FunCoupENSG00000215580
BioGRIDBCORP1
STRING (EMBL)BCORP1
ZODIACBCORP1
Ontologies - Pathways
QuickGOQ8N888
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBCORP1
Atlas of Cancer Signalling NetworkBCORP1
Wikipedia pathwaysBCORP1
Orthology - Evolution
OrthoDB286554
GeneTree (enSembl)ENSG00000215580
Phylogenetic Trees/Animal Genes : TreeFamBCORP1
HOVERGENQ8N888
HOGENOMQ8N888
Homologs : HomoloGeneBCORP1
Homology/Alignments : Family Browser (UCSC)BCORP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBCORP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BCORP1
dbVarBCORP1
ClinVarBCORP1
1000_GenomesBCORP1 
Exome Variant ServerBCORP1
ExAC (Exome Aggregation Consortium)BCORP1 (select the gene name)
Genetic variants : HAPMAP286554
Genomic Variants (DGV)BCORP1 [DGVbeta]
DECIPHERBCORP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBCORP1 
Mutations
ICGC Data PortalBCORP1 
TCGA Data PortalBCORP1 
Broad Tumor PortalBCORP1
OASIS PortalBCORP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBCORP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBCORP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BCORP1
DgiDB (Drug Gene Interaction Database)BCORP1
DoCM (Curated mutations)BCORP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BCORP1 (select a term)
intoGenBCORP1
Cancer3DBCORP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBCORP1
Genetic Testing Registry BCORP1
NextProtQ8N888 [Medical]
TSGene286554
GENETestsBCORP1
Target ValidationBCORP1
Huge Navigator BCORP1 [HugePedia]
snp3D : Map Gene to Disease286554
BioCentury BCIQBCORP1
ClinGenBCORP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD286554
Chemical/Pharm GKB GenePA134905726
Clinical trialBCORP1
Miscellaneous
canSAR (ICR)BCORP1 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCORP1
EVEXBCORP1
GoPubMedBCORP1
iHOPBCORP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:59:09 CEST 2017

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