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BCYRN1 (brain cytoplasmic RNA 1)

Identity

Alias_namesbrain cytoplasmic RNA 1, Bc1 analog (mouse)
brain cytoplasmic RNA 1 (non-protein coding)
Alias_symbol (synonym)BC200
BC200a
NCRNA00004
LINC00004
Other alias
HGNC (Hugo) BCYRN1
LocusID (NCBI) 618
Atlas_Id 46610
Location Xq13.1  [Link to chromosome band Xq13]
Location_base_pair Starts at 70430035 and ends at 70948962 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BCYRN1 (Xq13.1) / BAG1 (9p13.3)BCYRN1 (Xq13.1) / BCYRN1 (Xq13.1)BCYRN1 (Xq13.1) / CLEC1A (12p13.2)
BCYRN1 (Xq13.1) / DYNC1I2 (2q31.1)BCYRN1 (Xq13.1) / LMBR1 (7q36.3)BCYRN1 (Xq13.1) / RPL28 (19q13.42)
BCYRN1 (Xq13.1) / YWHAG (7q11.23)FTH1 (11q12.3) / BCYRN1 (Xq13.1)HNRNPA3 (2q31.2) / BCYRN1 (Xq13.1)
MOB2 (11p15.5) / BCYRN1 (Xq13.1)NPIPB7 (16q23.1) / BCYRN1 (Xq13.1)SMARCC2 (12q13.2) / BCYRN1 (Xq13.1)
SOX6 (11p15.2) / BCYRN1 (Xq13.1)SVEP1 (9q31.3) / BCYRN1 (Xq13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BCYRN1   1022
Cards
Entrez_Gene (NCBI)BCYRN1  618  brain cytoplasmic RNA 1
AliasesBC200; BC200a; LINC00004; NCRNA00004
GeneCards (Weizmann)BCYRN1
Ensembl hg19 (Hinxton) [Gene_View]  chrX:70430035-70948962 [Contig_View]  BCYRN1 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:70430035-70948962 [Contig_View]  BCYRN1 [Vega]
TCGA cBioPortalBCYRN1
AceView (NCBI)BCYRN1
Genatlas (Paris)BCYRN1
WikiGenes618
SOURCE (Princeton)BCYRN1
Genetics Home Reference (NIH)BCYRN1
Genomic and cartography
GoldenPath hg19 (UCSC)BCYRN1  -     chrX:70430035-70948962 -  Xq13.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BCYRN1  -     Xq13.1   [Description]    (hg38-Dec_2013)
EnsemblBCYRN1 - Xq13.1 [CytoView hg19]  BCYRN1 - Xq13.1 [CytoView hg38]
Mapping of homologs : NCBIBCYRN1 [Mapview hg19]  BCYRN1 [Mapview hg38]
OMIM606089   
Gene and transcription
Genbank (Entrez)HG493960
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_022184 NW_004929300
Consensus coding sequences : CCDS (NCBI)BCYRN1
Gene ExpressionBCYRN1 [ NCBI-GEO ]   BCYRN1 [ EBI - ARRAY_EXPRESS ]   BCYRN1 [ SEEK ]   BCYRN1 [ MEM ]
Gene Expression Viewer (FireBrowse)BCYRN1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)618
GTEX Portal (Tissue expression)BCYRN1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BCYRN1
DMDM Disease mutations618
Blocks (Seattle)BCYRN1
Protein Interaction databases
BioGRIDBCYRN1
STRING (EMBL)BCYRN1
ZODIACBCYRN1
Ontologies - Pathways
Huge Navigator BCYRN1 [HugePedia]
snp3D : Map Gene to Disease618
BioCentury BCIQBCYRN1
ClinGenBCYRN1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD618
Chemical/Pharm GKB GenePA25328
Clinical trialBCYRN1
Miscellaneous
canSAR (ICR)BCYRN1 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBCYRN1
EVEXBCYRN1
GoPubMedBCYRN1
iHOPBCYRN1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:55 CEST 2017

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