Atlas of Genetics and Cytogenetics in Oncology and Haematology

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BDNF (brain derived neurotrophic factor)

Identity

Alias (NCBI)ANON2
BULN2
HGNC (Hugo) BDNF
HGNC Alias nameneurotrophin
LocusID (NCBI) 627
Atlas_Id 46287
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 27654895 and ends at 27659649 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GPBP1 (5q11.2) / BDNF (11p14.1)SOCS7 (17q12) / BDNF (11p14.1)GPBP1 5q11.2 / BDNF 11p14.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BDNF   1033
Cards
Entrez_Gene (NCBI)BDNF    brain derived neurotrophic factor
AliasesANON2; BULN2
GeneCards (Weizmann)BDNF
Ensembl hg19 (Hinxton)ENSG00000176697 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000176697 [Gene_View]  ENSG00000176697 [Sequence]  chr11:27654895-27659649 [Contig_View]  BDNF [Vega]
ICGC DataPortalENSG00000176697
TCGA cBioPortalBDNF
AceView (NCBI)BDNF
Genatlas (Paris)BDNF
SOURCE (Princeton)BDNF
Genetics Home Reference (NIH)BDNF
Genomic and cartography
GoldenPath hg38 (UCSC)BDNF  -     chr11:27654895-27659649 -  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BDNF  -     11p14.1   [Description]    (hg19-Feb_2009)
GoldenPathBDNF - 11p14.1 [CytoView hg19]  BDNF - 11p14.1 [CytoView hg38]
ImmunoBaseENSG00000176697
genome Data Viewer NCBIBDNF [Mapview hg19]  
OMIM113505   
Gene and transcription
Genbank (Entrez)AB038670 AB038671 AB038672 AB038673 AB038674
RefSeq transcript (Entrez)NM_001143805 NM_001143806 NM_001143807 NM_001143808 NM_001143809 NM_001143810 NM_001143811 NM_001143812 NM_001143813 NM_001143814 NM_001143815 NM_001143816 NM_001709 NM_170731 NM_170732 NM_170733 NM_170734 NM_170735
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BDNF
Alternative Splicing GalleryENSG00000176697
Gene ExpressionBDNF [ NCBI-GEO ]   BDNF [ EBI - ARRAY_EXPRESS ]   BDNF [ SEEK ]   BDNF [ MEM ]
Gene Expression Viewer (FireBrowse)BDNF [ Firebrowse - Broad ]
GenevisibleExpression of BDNF in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)627
GTEX Portal (Tissue expression)BDNF
Human Protein AtlasENSG00000176697-BDNF [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BDNF
Blocks (Seattle)BDNF
Human Protein Atlas [tissue]ENSG00000176697-BDNF [tissue]
HPRD00214
IPIIPI00012058   IPI00336003   IPI00855724   IPI00917851   IPI00377232   IPI00979471   IPI00977029   
Protein Interaction databases
BioGRIDBDNF
STRING (EMBL)BDNF
ZODIACBDNF
Ontologies - Pathways
Litterature
PubMed499 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBDNF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Mar 25 19:12:41 CET 2021
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