Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BDNF-AS (BDNF antisense RNA)

Identity

Alias_namesBDNFOS
BDNF opposite strand (non-protein coding)
BDNF antisense RNA (non-protein coding)
Alias_symbol (synonym)BT2A
BT2B
BT2C
BT2D
NCRNA00049
BDNF-AS1
Other aliasANTI-BDNF
BDNF
HGNC (Hugo) BDNF-AS
LocusID (NCBI) 497258
Atlas_Id 60730
Location 11p14.1  [Link to chromosome band 11p14]
Location_base_pair Starts at 27506852 and ends at 27677803 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
C3orf49 (3p14.1) / BDNF-AS (11p14.1)SHANK2 (11q13.3) / BDNF-AS (11p14.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BDNF-AS   20608
Cards
Entrez_Gene (NCBI)BDNF-AS  497258  BDNF antisense RNA
AliasesANTI-BDNF; BDNF; BDNF-AS1; BDNFOS; 
NCRNA00049
GeneCards (Weizmann)BDNF-AS
Ensembl hg19 (Hinxton)ENSG00000245573 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000245573 [Gene_View]  chr11:27506852-27677803 [Contig_View]  BDNF-AS [Vega]
ICGC DataPortalENSG00000245573
TCGA cBioPortalBDNF-AS
AceView (NCBI)BDNF-AS
Genatlas (Paris)BDNF-AS
WikiGenes497258
SOURCE (Princeton)BDNF-AS
Genetics Home Reference (NIH)BDNF-AS
Genomic and cartography
GoldenPath hg38 (UCSC)BDNF-AS  -     chr11:27506852-27677803 +  11p14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BDNF-AS  -     11p14.1   [Description]    (hg19-Feb_2009)
EnsemblBDNF-AS - 11p14.1 [CytoView hg19]  BDNF-AS - 11p14.1 [CytoView hg38]
Mapping of homologs : NCBIBDNF-AS [Mapview hg19]  BDNF-AS [Mapview hg38]
OMIM611468   
Gene and transcription
Genbank (Entrez)AJ011597 AY054391 AY054401 AY054402 AY054403
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BDNF-AS
Cluster EST : UnigeneHs.675323 [ NCBI ]
CGAP (NCI)Hs.675323
Alternative Splicing GalleryENSG00000245573
Gene ExpressionBDNF-AS [ NCBI-GEO ]   BDNF-AS [ EBI - ARRAY_EXPRESS ]   BDNF-AS [ SEEK ]   BDNF-AS [ MEM ]
Gene Expression Viewer (FireBrowse)BDNF-AS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)497258
GTEX Portal (Tissue expression)BDNF-AS
Human Protein AtlasENSG00000245573-BDNF-AS [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BDNF-AS
DMDM Disease mutations497258
Blocks (Seattle)BDNF-AS
Human Protein Atlas [tissue]ENSG00000245573-BDNF-AS [tissue]
IPIIPI00883677   
Protein Interaction databases
FunCoupENSG00000245573
BioGRIDBDNF-AS
STRING (EMBL)BDNF-AS
ZODIACBDNF-AS
Ontologies - Pathways
Huge Navigator BDNF-AS [HugePedia]
snp3D : Map Gene to Disease497258
BioCentury BCIQBDNF-AS
ClinGenBDNF-AS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD497258
Chemical/Pharm GKB GenePA134953249
Clinical trialBDNF-AS
Miscellaneous
canSAR (ICR)BDNF-AS (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBDNF-AS
EVEXBDNF-AS
GoPubMedBDNF-AS
iHOPBDNF-AS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:59 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.