Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BDP1 (B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB)

Identity

Alias (NCBI)DFNB112
HSA238520
TAF3B1
TFC5
TFIIIB''
TFIIIB150
TFIIIB90
TFNR
HGNC (Hugo) BDP1
HGNC Alias symbTFIIIB150
TFC5
TFIIIB90
KIAA1689
HSA238520
KIAA1241
HGNC Previous nameTFNR
 TAF3B1
HGNC Previous nameTATA box binding protein (TBP)-associated factor, RNA polymerase III, GTF3B subunit 1
LocusID (NCBI) 55814
Atlas_Id 60731
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 71455651 and ends at 71567820 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BDP1 (5q13.2)::BDP1 (5q13.2)BDP1 (5q13.2)::CWC27 (5q12.3)BDP1 (5q13.2)::KDM5A (12p13.33)
USP8 (15q21.2)::BDP1 (5q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(5;6)(q13;q23) MYB::BDP1
t(5;6)(q13;q23) MYB::BDP1


External links

Nomenclature
HGNC (Hugo)BDP1   13652
Cards
Entrez_Gene (NCBI)BDP1    B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
AliasesDFNB112; HSA238520; TAF3B1; TFC5; 
TFIIIB''; TFIIIB150; TFIIIB90; TFNR
GeneCards (Weizmann)BDP1
Ensembl hg19 (Hinxton)ENSG00000145734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145734 [Gene_View]  ENSG00000145734 [Sequence]  chr5:71455651-71567820 [Contig_View]  BDP1 [Vega]
ICGC DataPortalENSG00000145734
TCGA cBioPortalBDP1
AceView (NCBI)BDP1
Genatlas (Paris)BDP1
SOURCE (Princeton)BDP1
Genetics Home Reference (NIH)BDP1
Genomic and cartography
GoldenPath hg38 (UCSC)BDP1  -     chr5:71455651-71567820 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BDP1  -     5q13.2   [Description]    (hg19-Feb_2009)
GoldenPathBDP1 - 5q13.2 [CytoView hg19]  BDP1 - 5q13.2 [CytoView hg38]
ImmunoBaseENSG00000145734
Genome Data Viewer NCBIBDP1 [Mapview hg19]  
OMIM607012   618257   
Gene and transcription
Genbank (Entrez)AB033067 AB051476 AF176695 AF298151 AF298152
RefSeq transcript (Entrez)NM_018429
Consensus coding sequences : CCDS (NCBI)BDP1
Gene ExpressionBDP1 [ NCBI-GEO ]   BDP1 [ EBI - ARRAY_EXPRESS ]   BDP1 [ SEEK ]   BDP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BDP1 [ Firebrowse - Broad ]
GenevisibleExpression of BDP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55814
GTEX Portal (Tissue expression)BDP1
Human Protein AtlasENSG00000145734-BDP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BDP1
Human Protein Atlas [tissue]ENSG00000145734-BDP1 [tissue]
HPRD06114
Protein Interaction databases
BioGRIDBDP1
STRING (EMBL)BDP1
ZODIACBDP1
Ontologies - Pathways
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBDP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Jan 16 18:45:50 CET 2022

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