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BECN2 (beclin 2)

Identity

Alias_namesBECN1P1
beclin 1
Other aliasBECN1L1
HGNC (Hugo) BECN2
LocusID (NCBI) 441925
Atlas_Id 51838
Location 1q43  [Link to chromosome band 1q43]
Location_base_pair Starts at 241957767 and ends at 241959062 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BECN2   38606
Cards
Entrez_Gene (NCBI)BECN2  441925  beclin 2
AliasesBECN1L1; BECN1P1
GeneCards (Weizmann)BECN2
Ensembl hg19 (Hinxton)ENSG00000196289 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196289 [Gene_View]  chr1:241957767-241959062 [Contig_View]  BECN2 [Vega]
ICGC DataPortalENSG00000196289
TCGA cBioPortalBECN2
AceView (NCBI)BECN2
Genatlas (Paris)BECN2
WikiGenes441925
SOURCE (Princeton)BECN2
Genetics Home Reference (NIH)BECN2
Genomic and cartography
GoldenPath hg38 (UCSC)BECN2  -     chr1:241957767-241959062 +  1q43   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BECN2  -     1q43   [Description]    (hg19-Feb_2009)
EnsemblBECN2 - 1q43 [CytoView hg19]  BECN2 - 1q43 [CytoView hg38]
Mapping of homologs : NCBIBECN2 [Mapview hg19]  BECN2 [Mapview hg38]
OMIM615687   
Gene and transcription
Genbank (Entrez)HM031116
RefSeq transcript (Entrez)NM_001290693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BECN2
Cluster EST : UnigeneHs.731347 [ NCBI ]
CGAP (NCI)Hs.731347
Alternative Splicing GalleryENSG00000196289
Gene ExpressionBECN2 [ NCBI-GEO ]   BECN2 [ EBI - ARRAY_EXPRESS ]   BECN2 [ SEEK ]   BECN2 [ MEM ]
Gene Expression Viewer (FireBrowse)BECN2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)441925
GTEX Portal (Tissue expression)BECN2
Protein : pattern, domain, 3D structure
UniProt/SwissProtA8MW95   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA8MW95  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA8MW95
Splice isoforms : SwissVarA8MW95
PhosPhoSitePlusA8MW95
Domains : Interpro (EBI)Atg6/Beclin    BECN2   
Domain families : Pfam (Sanger)APG6 (PF04111)   
Domain families : Pfam (NCBI)pfam04111   
Conserved Domain (NCBI)BECN2
DMDM Disease mutations441925
Blocks (Seattle)BECN2
SuperfamilyA8MW95
Human Protein AtlasENSG00000196289
Peptide AtlasA8MW95
IPIIPI00457355   
Protein Interaction databases
DIP (DOE-UCLA)A8MW95
IntAct (EBI)A8MW95
FunCoupENSG00000196289
BioGRIDBECN2
STRING (EMBL)BECN2
ZODIACBECN2
Ontologies - Pathways
QuickGOA8MW95
Ontology : AmiGOautophagosome assembly  pre-autophagosomal structure  protein binding  autophagy  cellular response to nitrogen starvation  endosome to lysosome transport  cytoplasmic vesicle  CVT pathway  protein complex binding  phosphatidylinositol 3-kinase complex, class III, type I  phosphatidylinositol 3-kinase complex, class III, type II  glucose homeostasis  nucleophagy  late endosome to vacuole transport  G-protein coupled receptor catabolic process  G-protein coupled receptor catabolic process  
Ontology : EGO-EBIautophagosome assembly  pre-autophagosomal structure  protein binding  autophagy  cellular response to nitrogen starvation  endosome to lysosome transport  cytoplasmic vesicle  CVT pathway  protein complex binding  phosphatidylinositol 3-kinase complex, class III, type I  phosphatidylinositol 3-kinase complex, class III, type II  glucose homeostasis  nucleophagy  late endosome to vacuole transport  G-protein coupled receptor catabolic process  G-protein coupled receptor catabolic process  
NDEx NetworkBECN2
Atlas of Cancer Signalling NetworkBECN2
Wikipedia pathwaysBECN2
Orthology - Evolution
OrthoDB441925
GeneTree (enSembl)ENSG00000196289
Phylogenetic Trees/Animal Genes : TreeFamBECN2
HOVERGENA8MW95
HOGENOMA8MW95
Homologs : HomoloGeneBECN2
Homology/Alignments : Family Browser (UCSC)BECN2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBECN2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BECN2
dbVarBECN2
ClinVarBECN2
1000_GenomesBECN2 
Exome Variant ServerBECN2
ExAC (Exome Aggregation Consortium)BECN2 (select the gene name)
Genetic variants : HAPMAP441925
Genomic Variants (DGV)BECN2 [DGVbeta]
DECIPHERBECN2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBECN2 
Mutations
ICGC Data PortalBECN2 
TCGA Data PortalBECN2 
Broad Tumor PortalBECN2
OASIS PortalBECN2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBECN2
BioMutasearch BECN2
DgiDB (Drug Gene Interaction Database)BECN2
DoCM (Curated mutations)BECN2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BECN2 (select a term)
intoGenBECN2
Cancer3DBECN2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615687   
Orphanet
MedgenBECN2
Genetic Testing Registry BECN2
NextProtA8MW95 [Medical]
TSGene441925
GENETestsBECN2
Target ValidationBECN2
Huge Navigator BECN2 [HugePedia]
snp3D : Map Gene to Disease441925
BioCentury BCIQBECN2
ClinGenBECN2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD441925
Clinical trialBECN2
Miscellaneous
canSAR (ICR)BECN2 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBECN2
EVEXBECN2
GoPubMedBECN2
iHOPBECN2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:25:28 CEST 2017

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