Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BEGAIN (brain enriched guanylate kinase associated)

Identity

Alias_namesbrain-enriched guanylate kinase-associated homolog (rat)
brain-enriched guanylate kinase-associated
Alias_symbol (synonym)KIAA1446
Other alias-
HGNC (Hugo) BEGAIN
LocusID (NCBI) 57596
Atlas_Id 60733
Location 14q32.2  [Link to chromosome band 14q32]
Location_base_pair Starts at 100537147 and ends at 100568070 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BEGAIN (14q32.2) / BEGAIN (14q32.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEGAIN   24163
Cards
Entrez_Gene (NCBI)BEGAIN  57596  brain enriched guanylate kinase associated
Aliases
GeneCards (Weizmann)BEGAIN
Ensembl hg19 (Hinxton)ENSG00000183092 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000183092 [Gene_View]  chr14:100537147-100568070 [Contig_View]  BEGAIN [Vega]
ICGC DataPortalENSG00000183092
TCGA cBioPortalBEGAIN
AceView (NCBI)BEGAIN
Genatlas (Paris)BEGAIN
WikiGenes57596
SOURCE (Princeton)BEGAIN
Genetics Home Reference (NIH)BEGAIN
Genomic and cartography
GoldenPath hg38 (UCSC)BEGAIN  -     chr14:100537147-100568070 -  14q32.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEGAIN  -     14q32.2   [Description]    (hg19-Feb_2009)
EnsemblBEGAIN - 14q32.2 [CytoView hg19]  BEGAIN - 14q32.2 [CytoView hg38]
Mapping of homologs : NCBIBEGAIN [Mapview hg19]  BEGAIN [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB040879 AL390162 BC002607 BG333264 EU832622
RefSeq transcript (Entrez)NM_001159531 NM_020836
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEGAIN
Cluster EST : UnigeneHs.211751 [ NCBI ]
CGAP (NCI)Hs.211751
Alternative Splicing GalleryENSG00000183092
Gene ExpressionBEGAIN [ NCBI-GEO ]   BEGAIN [ EBI - ARRAY_EXPRESS ]   BEGAIN [ SEEK ]   BEGAIN [ MEM ]
Gene Expression Viewer (FireBrowse)BEGAIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57596
GTEX Portal (Tissue expression)BEGAIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BUH8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BUH8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BUH8
Splice isoforms : SwissVarQ9BUH8
PhosPhoSitePlusQ9BUH8
Domains : Interpro (EBI)BEGAIN   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BEGAIN
DMDM Disease mutations57596
Blocks (Seattle)BEGAIN
SuperfamilyQ9BUH8
Human Protein AtlasENSG00000183092
Peptide AtlasQ9BUH8
HPRD06459
IPIIPI00010853   IPI01025165   IPI01024821   IPI01024941   IPI01025568   IPI01026561   IPI01026200   
Protein Interaction databases
DIP (DOE-UCLA)Q9BUH8
IntAct (EBI)Q9BUH8
FunCoupENSG00000183092
BioGRIDBEGAIN
STRING (EMBL)BEGAIN
ZODIACBEGAIN
Ontologies - Pathways
QuickGOQ9BUH8
Ontology : AmiGOprotein binding  cytoplasm  membrane  
Ontology : EGO-EBIprotein binding  cytoplasm  membrane  
NDEx NetworkBEGAIN
Atlas of Cancer Signalling NetworkBEGAIN
Wikipedia pathwaysBEGAIN
Orthology - Evolution
OrthoDB57596
GeneTree (enSembl)ENSG00000183092
Phylogenetic Trees/Animal Genes : TreeFamBEGAIN
HOVERGENQ9BUH8
HOGENOMQ9BUH8
Homologs : HomoloGeneBEGAIN
Homology/Alignments : Family Browser (UCSC)BEGAIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEGAIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEGAIN
dbVarBEGAIN
ClinVarBEGAIN
1000_GenomesBEGAIN 
Exome Variant ServerBEGAIN
ExAC (Exome Aggregation Consortium)BEGAIN (select the gene name)
Genetic variants : HAPMAP57596
Genomic Variants (DGV)BEGAIN [DGVbeta]
DECIPHERBEGAIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEGAIN 
Mutations
ICGC Data PortalBEGAIN 
TCGA Data PortalBEGAIN 
Broad Tumor PortalBEGAIN
OASIS PortalBEGAIN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEGAIN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEGAIN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEGAIN
DgiDB (Drug Gene Interaction Database)BEGAIN
DoCM (Curated mutations)BEGAIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEGAIN (select a term)
intoGenBEGAIN
Cancer3DBEGAIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBEGAIN
Genetic Testing Registry BEGAIN
NextProtQ9BUH8 [Medical]
TSGene57596
GENETestsBEGAIN
Target ValidationBEGAIN
Huge Navigator BEGAIN [HugePedia]
snp3D : Map Gene to Disease57596
BioCentury BCIQBEGAIN
ClinGenBEGAIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57596
Chemical/Pharm GKB GenePA162377453
Clinical trialBEGAIN
Miscellaneous
canSAR (ICR)BEGAIN (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEGAIN
EVEXBEGAIN
GoPubMedBEGAIN
iHOPBEGAIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:35 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.