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BEND2 (BEN domain containing 2)

Identity

Alias_namesCXorf20
chromosome X open reading frame 20
Alias_symbol (synonym)MGC33653
Other alias
HGNC (Hugo) BEND2
LocusID (NCBI) 139105
Atlas_Id 60734
Location Xp22.13  [Link to chromosome band Xp22]
Location_base_pair Starts at 18170936 and ends at 18220904 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEND2   28509
Cards
Entrez_Gene (NCBI)BEND2  139105  BEN domain containing 2
AliasesCXorf20
GeneCards (Weizmann)BEND2
Ensembl hg19 (Hinxton)ENSG00000177324 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177324 [Gene_View]  chrX:18170936-18220904 [Contig_View]  BEND2 [Vega]
ICGC DataPortalENSG00000177324
TCGA cBioPortalBEND2
AceView (NCBI)BEND2
Genatlas (Paris)BEND2
WikiGenes139105
SOURCE (Princeton)BEND2
Genetics Home Reference (NIH)BEND2
Genomic and cartography
GoldenPath hg38 (UCSC)BEND2  -     chrX:18170936-18220904 -  Xp22.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND2  -     Xp22.13   [Description]    (hg19-Feb_2009)
EnsemblBEND2 - Xp22.13 [CytoView hg19]  BEND2 - Xp22.13 [CytoView hg38]
Mapping of homologs : NCBIBEND2 [Mapview hg19]  BEND2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK128155 BC037301 BC096745 BX952865 DQ892470
RefSeq transcript (Entrez)NM_001184767 NM_153346
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEND2
Cluster EST : UnigeneHs.403802 [ NCBI ]
CGAP (NCI)Hs.403802
Alternative Splicing GalleryENSG00000177324
Gene ExpressionBEND2 [ NCBI-GEO ]   BEND2 [ EBI - ARRAY_EXPRESS ]   BEND2 [ SEEK ]   BEND2 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)139105
GTEX Portal (Tissue expression)BEND2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDZ0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDZ0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDZ0
Splice isoforms : SwissVarQ8NDZ0
PhosPhoSitePlusQ8NDZ0
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND2
DMDM Disease mutations139105
Blocks (Seattle)BEND2
SuperfamilyQ8NDZ0
Human Protein AtlasENSG00000177324
Peptide AtlasQ8NDZ0
HPRD06646
IPIIPI00168627   IPI00844195   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDZ0
IntAct (EBI)Q8NDZ0
FunCoupENSG00000177324
BioGRIDBEND2
STRING (EMBL)BEND2
ZODIACBEND2
Ontologies - Pathways
QuickGOQ8NDZ0
Ontology : AmiGOskeletal muscle fiber development  
Ontology : EGO-EBIskeletal muscle fiber development  
NDEx NetworkBEND2
Atlas of Cancer Signalling NetworkBEND2
Wikipedia pathwaysBEND2
Orthology - Evolution
OrthoDB139105
GeneTree (enSembl)ENSG00000177324
Phylogenetic Trees/Animal Genes : TreeFamBEND2
HOVERGENQ8NDZ0
HOGENOMQ8NDZ0
Homologs : HomoloGeneBEND2
Homology/Alignments : Family Browser (UCSC)BEND2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND2
dbVarBEND2
ClinVarBEND2
1000_GenomesBEND2 
Exome Variant ServerBEND2
ExAC (Exome Aggregation Consortium)BEND2 (select the gene name)
Genetic variants : HAPMAP139105
Genomic Variants (DGV)BEND2 [DGVbeta]
DECIPHERBEND2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND2 
Mutations
ICGC Data PortalBEND2 
TCGA Data PortalBEND2 
Broad Tumor PortalBEND2
OASIS PortalBEND2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch BEND2
DgiDB (Drug Gene Interaction Database)BEND2
DoCM (Curated mutations)BEND2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND2 (select a term)
intoGenBEND2
Cancer3DBEND2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBEND2
Genetic Testing Registry BEND2
NextProtQ8NDZ0 [Medical]
TSGene139105
GENETestsBEND2
Target ValidationBEND2
Huge Navigator BEND2 [HugePedia]
snp3D : Map Gene to Disease139105
BioCentury BCIQBEND2
ClinGenBEND2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD139105
Chemical/Pharm GKB GenePA164716507
Clinical trialBEND2
Miscellaneous
canSAR (ICR)BEND2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND2
EVEXBEND2
GoPubMedBEND2
iHOPBEND2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:16 CEST 2017

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