Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BEND3 (BEN domain containing 3)

Identity

Alias_namesKIAA1553
KIAA1553
Other alias
HGNC (Hugo) BEND3
LocusID (NCBI) 57673
Atlas_Id 60735
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 107065181 and ends at 107114432 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BEND3 (6q21) / AIM1 (6q21)C6orf203 (6q21) / BEND3 (6q21)MED23 (6q23.2) / BEND3 (6q21)
MED23 BEND3C6orf203 BEND3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(6;6)(q21;q23) MED23/BEND3


External links

Nomenclature
HGNC (Hugo)BEND3   23040
Cards
Entrez_Gene (NCBI)BEND3  57673  BEN domain containing 3
AliasesKIAA1553
GeneCards (Weizmann)BEND3
Ensembl hg19 (Hinxton)ENSG00000178409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000178409 [Gene_View]  ENSG00000178409 [Sequence]  chr6:107065181-107114432 [Contig_View]  BEND3 [Vega]
ICGC DataPortalENSG00000178409
TCGA cBioPortalBEND3
AceView (NCBI)BEND3
Genatlas (Paris)BEND3
WikiGenes57673
SOURCE (Princeton)BEND3
Genetics Home Reference (NIH)BEND3
Genomic and cartography
GoldenPath hg38 (UCSC)BEND3  -     chr6:107065181-107114432 -  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND3  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblBEND3 - 6q21 [CytoView hg19]  BEND3 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIBEND3 [Mapview hg19]  BEND3 [Mapview hg38]
OMIM616374   
Gene and transcription
Genbank (Entrez)AB046773 AK026996 BC131628
RefSeq transcript (Entrez)NM_001080450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEND3
Cluster EST : UnigeneHs.418045 [ NCBI ]
CGAP (NCI)Hs.418045
Alternative Splicing GalleryENSG00000178409
Gene ExpressionBEND3 [ NCBI-GEO ]   BEND3 [ EBI - ARRAY_EXPRESS ]   BEND3 [ SEEK ]   BEND3 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57673
GTEX Portal (Tissue expression)BEND3
Human Protein AtlasENSG00000178409-BEND3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T5X7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T5X7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T5X7
Splice isoforms : SwissVarQ5T5X7
PhosPhoSitePlusQ5T5X7
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain    BEND3   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND3
DMDM Disease mutations57673
Blocks (Seattle)BEND3
SuperfamilyQ5T5X7
Human Protein Atlas [tissue]ENSG00000178409-BEND3 [tissue]
Peptide AtlasQ5T5X7
IPIIPI00741958   
Protein Interaction databases
DIP (DOE-UCLA)Q5T5X7
IntAct (EBI)Q5T5X7
FunCoupENSG00000178409
BioGRIDBEND3
STRING (EMBL)BEND3
ZODIACBEND3
Ontologies - Pathways
QuickGOQ5T5X7
Ontology : AmiGO###############################################################################################################################################################################################################################################################                            
Ontology : EGO-EBI###############################################################################################################################################################################################################################################################                            
NDEx NetworkBEND3
Atlas of Cancer Signalling NetworkBEND3
Wikipedia pathwaysBEND3
Orthology - Evolution
OrthoDB57673
GeneTree (enSembl)ENSG00000178409
Phylogenetic Trees/Animal Genes : TreeFamBEND3
HOVERGENQ5T5X7
HOGENOMQ5T5X7
Homologs : HomoloGeneBEND3
Homology/Alignments : Family Browser (UCSC)BEND3
Gene fusions - Rearrangements
Fusion PortalMED23 BEND3
Fusion PortalC6orf203 BEND3
Fusion : QuiverBEND3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND3
dbVarBEND3
ClinVarBEND3
1000_GenomesBEND3 
Exome Variant ServerBEND3
ExAC (Exome Aggregation Consortium)ENSG00000178409
GNOMAD BrowserENSG00000178409
Varsome BrowserBEND3
Genetic variants : HAPMAP57673
Genomic Variants (DGV)BEND3 [DGVbeta]
DECIPHERBEND3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND3 
Mutations
ICGC Data PortalBEND3 
TCGA Data PortalBEND3 
Broad Tumor PortalBEND3
OASIS PortalBEND3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEND3
DgiDB (Drug Gene Interaction Database)BEND3
DoCM (Curated mutations)BEND3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND3 (select a term)
intoGenBEND3
Cancer3DBEND3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616374   
Orphanet
DisGeNETBEND3
MedgenBEND3
Genetic Testing Registry BEND3
NextProtQ5T5X7 [Medical]
TSGene57673
GENETestsBEND3
Target ValidationBEND3
Huge Navigator BEND3 [HugePedia]
snp3D : Map Gene to Disease57673
BioCentury BCIQBEND3
ClinGenBEND3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57673
Chemical/Pharm GKB GenePA164716540
Clinical trialBEND3
Miscellaneous
canSAR (ICR)BEND3 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND3
EVEXBEND3
GoPubMedBEND3
iHOPBEND3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:36:47 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.