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BEND4 (BEN domain containing 4)

Identity

Alias_namesCCDC4
coiled-coil domain containing 4
Alias_symbol (synonym)FLJ35632
FLJ43965
Other alias
HGNC (Hugo) BEND4
LocusID (NCBI) 389206
Atlas_Id 60737
Location 4p13  [Link to chromosome band 4p13]
Location_base_pair Starts at 42112870 and ends at 42154895 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEND4   23815
Cards
Entrez_Gene (NCBI)BEND4  389206  BEN domain containing 4
AliasesCCDC4
GeneCards (Weizmann)BEND4
Ensembl hg19 (Hinxton)ENSG00000188848 [Gene_View]  chr4:42112870-42154895 [Contig_View]  BEND4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000188848 [Gene_View]  chr4:42112870-42154895 [Contig_View]  BEND4 [Vega]
ICGC DataPortalENSG00000188848
TCGA cBioPortalBEND4
AceView (NCBI)BEND4
Genatlas (Paris)BEND4
WikiGenes389206
SOURCE (Princeton)BEND4
Genetics Home Reference (NIH)BEND4
Genomic and cartography
GoldenPath hg19 (UCSC)BEND4  -     chr4:42112870-42154895 -  4p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BEND4  -     4p13   [Description]    (hg38-Dec_2013)
EnsemblBEND4 - 4p13 [CytoView hg19]  BEND4 - 4p13 [CytoView hg38]
Mapping of homologs : NCBIBEND4 [Mapview hg19]  BEND4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA757195 AB126828 AB126829 AK092951 AK125953
RefSeq transcript (Entrez)NM_001159547 NM_207406
RefSeq genomic (Entrez)NC_000004 NC_018915 NT_006238 NW_004929317
Consensus coding sequences : CCDS (NCBI)BEND4
Cluster EST : UnigeneHs.120591 [ NCBI ]
CGAP (NCI)Hs.120591
Alternative Splicing GalleryENSG00000188848
Gene ExpressionBEND4 [ NCBI-GEO ]   BEND4 [ EBI - ARRAY_EXPRESS ]   BEND4 [ SEEK ]   BEND4 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)389206
GTEX Portal (Tissue expression)BEND4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZU67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZU67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZU67
Splice isoforms : SwissVarQ6ZU67
PhosPhoSitePlusQ6ZU67
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND4
DMDM Disease mutations389206
Blocks (Seattle)BEND4
SuperfamilyQ6ZU67
Human Protein AtlasENSG00000188848
Peptide AtlasQ6ZU67
HPRD13481
IPIIPI00966189   IPI00656126   IPI00410472   IPI00556126   IPI00921371   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZU67
IntAct (EBI)Q6ZU67
FunCoupENSG00000188848
BioGRIDBEND4
STRING (EMBL)BEND4
ZODIACBEND4
Ontologies - Pathways
QuickGOQ6ZU67
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBEND4
Atlas of Cancer Signalling NetworkBEND4
Wikipedia pathwaysBEND4
Orthology - Evolution
OrthoDB389206
GeneTree (enSembl)ENSG00000188848
Phylogenetic Trees/Animal Genes : TreeFamBEND4
HOVERGENQ6ZU67
HOGENOMQ6ZU67
Homologs : HomoloGeneBEND4
Homology/Alignments : Family Browser (UCSC)BEND4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND4
dbVarBEND4
ClinVarBEND4
1000_GenomesBEND4 
Exome Variant ServerBEND4
ExAC (Exome Aggregation Consortium)BEND4 (select the gene name)
Genetic variants : HAPMAP389206
Genomic Variants (DGV)BEND4 [DGVbeta]
DECIPHER (Syndromes)4:42112870-42154895  ENSG00000188848
CONAN: Copy Number AnalysisBEND4 
Mutations
ICGC Data PortalBEND4 
TCGA Data PortalBEND4 
Broad Tumor PortalBEND4
OASIS PortalBEND4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEND4
DgiDB (Drug Gene Interaction Database)BEND4
DoCM (Curated mutations)BEND4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND4 (select a term)
intoGenBEND4
Cancer3DBEND4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBEND4
Genetic Testing Registry BEND4
NextProtQ6ZU67 [Medical]
TSGene389206
GENETestsBEND4
Huge Navigator BEND4 [HugePedia]
snp3D : Map Gene to Disease389206
BioCentury BCIQBEND4
ClinGenBEND4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD389206
Chemical/Pharm GKB GenePA164716541
Clinical trialBEND4
Miscellaneous
canSAR (ICR)BEND4 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND4
EVEXBEND4
GoPubMedBEND4
iHOPBEND4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:46 CET 2017

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