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BEND5 (BEN domain containing 5)

Identity

Alias_namesC1orf165
chromosome 1 open reading frame 165
Alias_symbol (synonym)FLJ11588
Other alias
HGNC (Hugo) BEND5
LocusID (NCBI) 79656
Atlas_Id 54152
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 48727523 and ends at 48776969 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID1A (1p36.11) / BEND5 (1p33)SPATA6 (1p33) / BEND5 (1p33)ARID1A 1p36.11 / BEND5 1p33
SPATA6 1p33 / BEND5 1p33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(1;1)(p33;p36) ARID1A/BEND5


External links

Nomenclature
HGNC (Hugo)BEND5   25668
Cards
Entrez_Gene (NCBI)BEND5  79656  BEN domain containing 5
AliasesC1orf165
GeneCards (Weizmann)BEND5
Ensembl hg19 (Hinxton)ENSG00000162373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162373 [Gene_View]  ENSG00000162373 [Sequence]  chr1:48727523-48776969 [Contig_View]  BEND5 [Vega]
ICGC DataPortalENSG00000162373
TCGA cBioPortalBEND5
AceView (NCBI)BEND5
Genatlas (Paris)BEND5
WikiGenes79656
SOURCE (Princeton)BEND5
Genetics Home Reference (NIH)BEND5
Genomic and cartography
GoldenPath hg38 (UCSC)BEND5  -     chr1:48727523-48776969 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND5  -     1p33   [Description]    (hg19-Feb_2009)
EnsemblBEND5 - 1p33 [CytoView hg19]  BEND5 - 1p33 [CytoView hg38]
Mapping of homologs : NCBIBEND5 [Mapview hg19]  BEND5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK021650 AK055449 AK096573 BC007932 BC011804
RefSeq transcript (Entrez)NM_001302082 NM_001349793 NM_001349794 NM_001349795 NM_024603
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEND5
Cluster EST : UnigeneHs.475348 [ NCBI ]
CGAP (NCI)Hs.475348
Alternative Splicing GalleryENSG00000162373
Gene ExpressionBEND5 [ NCBI-GEO ]   BEND5 [ EBI - ARRAY_EXPRESS ]   BEND5 [ SEEK ]   BEND5 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79656
GTEX Portal (Tissue expression)BEND5
Human Protein AtlasENSG00000162373-BEND5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L4P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L4P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L4P6
Splice isoforms : SwissVarQ7L4P6
PhosPhoSitePlusQ7L4P6
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND5
DMDM Disease mutations79656
Blocks (Seattle)BEND5
SuperfamilyQ7L4P6
Human Protein Atlas [tissue]ENSG00000162373-BEND5 [tissue]
Peptide AtlasQ7L4P6
IPIIPI00302742   IPI00827810   
Protein Interaction databases
DIP (DOE-UCLA)Q7L4P6
IntAct (EBI)Q7L4P6
FunCoupENSG00000162373
BioGRIDBEND5
STRING (EMBL)BEND5
ZODIACBEND5
Ontologies - Pathways
QuickGOQ7L4P6
Ontology : AmiGODNA binding  protein binding  Golgi apparatus  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  Golgi apparatus  negative regulation of transcription, DNA-templated  
NDEx NetworkBEND5
Atlas of Cancer Signalling NetworkBEND5
Wikipedia pathwaysBEND5
Orthology - Evolution
OrthoDB79656
GeneTree (enSembl)ENSG00000162373
Phylogenetic Trees/Animal Genes : TreeFamBEND5
HOVERGENQ7L4P6
HOGENOMQ7L4P6
Homologs : HomoloGeneBEND5
Homology/Alignments : Family Browser (UCSC)BEND5
Gene fusions - Rearrangements
Fusion : MitelmanARID1A/BEND5 [1p36.11/1p33]  [t(1;1)(p33;p36)]  
Fusion PortalARID1A 1p36.11 BEND5 1p33 GBM
Fusion PortalSPATA6 1p33 BEND5 1p33 LUAD
Fusion : QuiverBEND5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND5
dbVarBEND5
ClinVarBEND5
1000_GenomesBEND5 
Exome Variant ServerBEND5
ExAC (Exome Aggregation Consortium)ENSG00000162373
GNOMAD BrowserENSG00000162373
Varsome BrowserBEND5
Genetic variants : HAPMAP79656
Genomic Variants (DGV)BEND5 [DGVbeta]
DECIPHERBEND5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND5 
Mutations
ICGC Data PortalBEND5 
TCGA Data PortalBEND5 
Broad Tumor PortalBEND5
OASIS PortalBEND5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEND5
DgiDB (Drug Gene Interaction Database)BEND5
DoCM (Curated mutations)BEND5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND5 (select a term)
intoGenBEND5
Cancer3DBEND5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBEND5
MedgenBEND5
Genetic Testing Registry BEND5
NextProtQ7L4P6 [Medical]
TSGene79656
GENETestsBEND5
Target ValidationBEND5
Huge Navigator BEND5 [HugePedia]
snp3D : Map Gene to Disease79656
BioCentury BCIQBEND5
ClinGenBEND5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79656
Chemical/Pharm GKB GenePA164716542
Clinical trialBEND5
Miscellaneous
canSAR (ICR)BEND5 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND5
EVEXBEND5
GoPubMedBEND5
iHOPBEND5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:53:59 CET 2018

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