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BEND5 (BEN domain containing 5)

Identity

Alias (NCBI)C1orf165
HGNC (Hugo) BEND5
HGNC Alias symbFLJ11588
HGNC Previous nameC1orf165
HGNC Previous namechromosome 1 open reading frame 165
LocusID (NCBI) 79656
Atlas_Id 54152
Location 1p33  [Link to chromosome band 1p33]
Location_base_pair Starts at 48727519 and ends at 48776891 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID1A (1p36.11) / BEND5 (1p33)SPATA6 (1p33) / BEND5 (1p33)ARID1A 1p36.11 / BEND5 1p33
SPATA6 1p33 / BEND5 1p33

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BEND5   25668
Cards
Entrez_Gene (NCBI)BEND5    BEN domain containing 5
AliasesC1orf165
GeneCards (Weizmann)BEND5
Ensembl hg19 (Hinxton)ENSG00000162373 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162373 [Gene_View]  ENSG00000162373 [Sequence]  chr1:48727519-48776891 [Contig_View]  BEND5 [Vega]
ICGC DataPortalENSG00000162373
TCGA cBioPortalBEND5
AceView (NCBI)BEND5
Genatlas (Paris)BEND5
SOURCE (Princeton)BEND5
Genetics Home Reference (NIH)BEND5
Genomic and cartography
GoldenPath hg38 (UCSC)BEND5  -     chr1:48727519-48776891 -  1p33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND5  -     1p33   [Description]    (hg19-Feb_2009)
GoldenPathBEND5 - 1p33 [CytoView hg19]  BEND5 - 1p33 [CytoView hg38]
ImmunoBaseENSG00000162373
Genome Data Viewer NCBIBEND5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK021650 AK055449 AK096573 BC007932 BC011804
RefSeq transcript (Entrez)NM_001302082 NM_001349793 NM_001349794 NM_001349795 NM_024603
Consensus coding sequences : CCDS (NCBI)BEND5
Gene ExpressionBEND5 [ NCBI-GEO ]   BEND5 [ EBI - ARRAY_EXPRESS ]   BEND5 [ SEEK ]   BEND5 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND5 [ Firebrowse - Broad ]
GenevisibleExpression of BEND5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79656
GTEX Portal (Tissue expression)BEND5
Human Protein AtlasENSG00000162373-BEND5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L4P6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L4P6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L4P6
PhosPhoSitePlusQ7L4P6
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain    BEND5   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND5
SuperfamilyQ7L4P6
AlphaFold pdb e-kbQ7L4P6   
Human Protein Atlas [tissue]ENSG00000162373-BEND5 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q7L4P6
IntAct (EBI)Q7L4P6
BioGRIDBEND5
STRING (EMBL)BEND5
ZODIACBEND5
Ontologies - Pathways
QuickGOQ7L4P6
Ontology : AmiGODNA binding  protein binding  Golgi apparatus  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
Ontology : EGO-EBIDNA binding  protein binding  Golgi apparatus  negative regulation of transcription, DNA-templated  negative regulation of transcription, DNA-templated  
NDEx NetworkBEND5
Atlas of Cancer Signalling NetworkBEND5
Wikipedia pathwaysBEND5
Orthology - Evolution
OrthoDB79656
GeneTree (enSembl)ENSG00000162373
Phylogenetic Trees/Animal Genes : TreeFamBEND5
Homologs : HomoloGeneBEND5
Homology/Alignments : Family Browser (UCSC)BEND5
Gene fusions - Rearrangements
Fusion : MitelmanARID1A/BEND5 [1p36.11/1p33]  
Fusion : QuiverBEND5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND5
dbVarBEND5
ClinVarBEND5
MonarchBEND5
1000_GenomesBEND5 
Exome Variant ServerBEND5
GNOMAD BrowserENSG00000162373
Varsome BrowserBEND5
ACMGBEND5 variants
VarityQ7L4P6
Genomic Variants (DGV)BEND5 [DGVbeta]
DECIPHERBEND5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND5 
Mutations
ICGC Data PortalBEND5 
TCGA Data PortalBEND5 
Broad Tumor PortalBEND5
OASIS PortalBEND5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND5  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBEND5
Mutations and Diseases : HGMDBEND5
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBEND5
DgiDB (Drug Gene Interaction Database)BEND5
DoCM (Curated mutations)BEND5
CIViC (Clinical Interpretations of Variants in Cancer)BEND5
Cancer3DBEND5
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBEND5
MedgenBEND5
Genetic Testing Registry BEND5
NextProtQ7L4P6 [Medical]
GENETestsBEND5
Target ValidationBEND5
Huge Navigator BEND5 [HugePedia]
ClinGenBEND5
Clinical trials, drugs, therapy
MyCancerGenomeBEND5
Protein Interactions : CTDBEND5
Pharm GKB GenePA164716542
PharosQ7L4P6
Clinical trialBEND5
Miscellaneous
canSAR (ICR)BEND5
HarmonizomeBEND5
DataMed IndexBEND5
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBEND5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:09 CEST 2021

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