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BEND6 (BEN domain containing 6)

Identity

Alias_namesC6orf65
chromosome 6 open reading frame 65
Alias_symbol (synonym)FLJ30162
bA203B9.1
Other alias
HGNC (Hugo) BEND6
LocusID (NCBI) 221336
Atlas_Id 54153
Location 6p12.1  [Link to chromosome band 6p12]
Location_base_pair Starts at 56954975 and ends at 57027344 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BEND6 (6p12.1) / TRIM38 (6p22.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  Lung: Translocations in Squamous Cell Carcinoma
t(6;6)(p12;p22) BEND6/TRIM38


External links

Nomenclature
HGNC (Hugo)BEND6   20871
Cards
Entrez_Gene (NCBI)BEND6  221336  BEN domain containing 6
AliasesC6orf65
GeneCards (Weizmann)BEND6
Ensembl hg19 (Hinxton)ENSG00000151917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151917 [Gene_View]  ENSG00000151917 [Sequence]  chr6:56954975-57027344 [Contig_View]  BEND6 [Vega]
ICGC DataPortalENSG00000151917
TCGA cBioPortalBEND6
AceView (NCBI)BEND6
Genatlas (Paris)BEND6
WikiGenes221336
SOURCE (Princeton)BEND6
Genetics Home Reference (NIH)BEND6
Genomic and cartography
GoldenPath hg38 (UCSC)BEND6  -     chr6:56954975-57027344 +  6p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND6  -     6p12.1   [Description]    (hg19-Feb_2009)
EnsemblBEND6 - 6p12.1 [CytoView hg19]  BEND6 - 6p12.1 [CytoView hg38]
Mapping of homologs : NCBIBEND6 [Mapview hg19]  BEND6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI803591 AK054724 AK303705 AK315926 BC022988
RefSeq transcript (Entrez)NM_001318539 NM_152731
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEND6
Cluster EST : UnigeneHs.582993 [ NCBI ]
CGAP (NCI)Hs.582993
Alternative Splicing GalleryENSG00000151917
Gene ExpressionBEND6 [ NCBI-GEO ]   BEND6 [ EBI - ARRAY_EXPRESS ]   BEND6 [ SEEK ]   BEND6 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221336
GTEX Portal (Tissue expression)BEND6
Human Protein AtlasENSG00000151917-BEND6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SZJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SZJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SZJ8
Splice isoforms : SwissVarQ5SZJ8
PhosPhoSitePlusQ5SZJ8
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain    BEND6   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND6
DMDM Disease mutations221336
Blocks (Seattle)BEND6
SuperfamilyQ5SZJ8
Human Protein Atlas [tissue]ENSG00000151917-BEND6 [tissue]
Peptide AtlasQ5SZJ8
HPRD12893
IPIIPI00074656   IPI00645982   IPI00166938   IPI00639920   IPI00515116   
Protein Interaction databases
DIP (DOE-UCLA)Q5SZJ8
IntAct (EBI)Q5SZJ8
FunCoupENSG00000151917
BioGRIDBEND6
STRING (EMBL)BEND6
ZODIACBEND6
Ontologies - Pathways
QuickGOQ5SZJ8
Ontology : AmiGOchromatin binding  transcription corepressor activity  nucleus  positive regulation of neuron differentiation  negative regulation of Notch signaling pathway  negative regulation of nucleic acid-templated transcription  
Ontology : EGO-EBIchromatin binding  transcription corepressor activity  nucleus  positive regulation of neuron differentiation  negative regulation of Notch signaling pathway  negative regulation of nucleic acid-templated transcription  
NDEx NetworkBEND6
Atlas of Cancer Signalling NetworkBEND6
Wikipedia pathwaysBEND6
Orthology - Evolution
OrthoDB221336
GeneTree (enSembl)ENSG00000151917
Phylogenetic Trees/Animal Genes : TreeFamBEND6
HOVERGENQ5SZJ8
HOGENOMQ5SZJ8
Homologs : HomoloGeneBEND6
Homology/Alignments : Family Browser (UCSC)BEND6
Gene fusions - Rearrangements
Fusion : MitelmanBEND6/TRIM38 [6p12.1/6p22.2]  
Fusion : QuiverBEND6
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND6
dbVarBEND6
ClinVarBEND6
1000_GenomesBEND6 
Exome Variant ServerBEND6
ExAC (Exome Aggregation Consortium)ENSG00000151917
GNOMAD BrowserENSG00000151917
Varsome BrowserBEND6
Genetic variants : HAPMAP221336
Genomic Variants (DGV)BEND6 [DGVbeta]
DECIPHERBEND6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND6 
Mutations
ICGC Data PortalBEND6 
TCGA Data PortalBEND6 
Broad Tumor PortalBEND6
OASIS PortalBEND6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEND6
DgiDB (Drug Gene Interaction Database)BEND6
DoCM (Curated mutations)BEND6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND6 (select a term)
intoGenBEND6
Cancer3DBEND6(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBEND6
MedgenBEND6
Genetic Testing Registry BEND6
NextProtQ5SZJ8 [Medical]
TSGene221336
GENETestsBEND6
Target ValidationBEND6
Huge Navigator BEND6 [HugePedia]
snp3D : Map Gene to Disease221336
BioCentury BCIQBEND6
ClinGenBEND6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221336
Chemical/Pharm GKB GenePA164716559
Clinical trialBEND6
Miscellaneous
canSAR (ICR)BEND6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND6
EVEXBEND6
GoPubMedBEND6
iHOPBEND6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:53:59 CET 2018

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