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BEND7 (BEN domain containing 7)

Identity

Alias_namesC10orf30
chromosome 10 open reading frame 30
Alias_symbol (synonym)FLJ40283
Other alias
HGNC (Hugo) BEND7
LocusID (NCBI) 222389
Atlas_Id 60738
Location 10p13  [Link to chromosome band 10p13]
Location_base_pair Starts at 13441088 and ends at 13502976 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEND7   23514
Cards
Entrez_Gene (NCBI)BEND7  222389  BEN domain containing 7
AliasesC10orf30
GeneCards (Weizmann)BEND7
Ensembl hg19 (Hinxton)ENSG00000165626 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165626 [Gene_View]  chr10:13441088-13502976 [Contig_View]  BEND7 [Vega]
ICGC DataPortalENSG00000165626
TCGA cBioPortalBEND7
AceView (NCBI)BEND7
Genatlas (Paris)BEND7
WikiGenes222389
SOURCE (Princeton)BEND7
Genetics Home Reference (NIH)BEND7
Genomic and cartography
GoldenPath hg38 (UCSC)BEND7  -     chr10:13441088-13502976 -  10p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEND7  -     10p13   [Description]    (hg19-Feb_2009)
EnsemblBEND7 - 10p13 [CytoView hg19]  BEND7 - 10p13 [CytoView hg38]
Mapping of homologs : NCBIBEND7 [Mapview hg19]  BEND7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097602 AL832195 BC029597 BC031618
RefSeq transcript (Entrez)NM_001100912 NM_152751
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEND7
Cluster EST : UnigeneHs.498740 [ NCBI ]
CGAP (NCI)Hs.498740
Alternative Splicing GalleryENSG00000165626
Gene ExpressionBEND7 [ NCBI-GEO ]   BEND7 [ EBI - ARRAY_EXPRESS ]   BEND7 [ SEEK ]   BEND7 [ MEM ]
Gene Expression Viewer (FireBrowse)BEND7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)222389
GTEX Portal (Tissue expression)BEND7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7W2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7W2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7W2
Splice isoforms : SwissVarQ8N7W2
PhosPhoSitePlusQ8N7W2
Domaine pattern : Prosite (Expaxy)BEN (PS51457)   
Domains : Interpro (EBI)BEN_domain   
Domain families : Pfam (Sanger)BEN (PF10523)   
Domain families : Pfam (NCBI)pfam10523   
Domain families : Smart (EMBL)BEN (SM01025)  
Conserved Domain (NCBI)BEND7
DMDM Disease mutations222389
Blocks (Seattle)BEND7
SuperfamilyQ8N7W2
Human Protein AtlasENSG00000165626
Peptide AtlasQ8N7W2
HPRD12570
IPIIPI00550463   IPI00167356   IPI00873852   IPI00973139   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7W2
IntAct (EBI)Q8N7W2
FunCoupENSG00000165626
BioGRIDBEND7
STRING (EMBL)BEND7
ZODIACBEND7
Ontologies - Pathways
QuickGOQ8N7W2
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
NDEx NetworkBEND7
Atlas of Cancer Signalling NetworkBEND7
Wikipedia pathwaysBEND7
Orthology - Evolution
OrthoDB222389
GeneTree (enSembl)ENSG00000165626
Phylogenetic Trees/Animal Genes : TreeFamBEND7
HOVERGENQ8N7W2
HOGENOMQ8N7W2
Homologs : HomoloGeneBEND7
Homology/Alignments : Family Browser (UCSC)BEND7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEND7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEND7
dbVarBEND7
ClinVarBEND7
1000_GenomesBEND7 
Exome Variant ServerBEND7
ExAC (Exome Aggregation Consortium)BEND7 (select the gene name)
Genetic variants : HAPMAP222389
Genomic Variants (DGV)BEND7 [DGVbeta]
DECIPHERBEND7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEND7 
Mutations
ICGC Data PortalBEND7 
TCGA Data PortalBEND7 
Broad Tumor PortalBEND7
OASIS PortalBEND7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEND7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEND7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEND7
DgiDB (Drug Gene Interaction Database)BEND7
DoCM (Curated mutations)BEND7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEND7 (select a term)
intoGenBEND7
Cancer3DBEND7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBEND7
Genetic Testing Registry BEND7
NextProtQ8N7W2 [Medical]
TSGene222389
GENETestsBEND7
Target ValidationBEND7
Huge Navigator BEND7 [HugePedia]
snp3D : Map Gene to Disease222389
BioCentury BCIQBEND7
ClinGenBEND7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD222389
Chemical/Pharm GKB GenePA164716578
Clinical trialBEND7
Miscellaneous
canSAR (ICR)BEND7 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEND7
EVEXBEND7
GoPubMedBEND7
iHOPBEND7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:17 CEST 2017

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