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BET1 (Bet1 golgi vesicular membrane trafficking protein)

Identity

Alias (NCBI)HBET1
HGNC (Hugo) BET1
HGNC Alias symbhbet1
HGNC Alias nameGolgi vesicular membrane trafficking protein p18
 Bet1p homolog
HGNC Previous nameBet1 (S. cerevisiae) homolog
 BET1 homolog (S. cerevisiae)
 blocked early in transport 1 homolog (S. cerevisiae)
LocusID (NCBI) 10282
Atlas_Id 56255
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 93993245 and ends at 94004355 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
COL26A1 (7q22.1)::BET1 (7q21.3)PHTF2 (7q11.23)::BET1 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BET1   14562
Cards
Entrez_Gene (NCBI)BET1    Bet1 golgi vesicular membrane trafficking protein
AliasesHBET1
GeneCards (Weizmann)BET1
Ensembl hg19 (Hinxton)ENSG00000105829 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105829 [Gene_View]  ENSG00000105829 [Sequence]  chr7:93993245-94004355 [Contig_View]  BET1 [Vega]
ICGC DataPortalENSG00000105829
TCGA cBioPortalBET1
AceView (NCBI)BET1
Genatlas (Paris)BET1
SOURCE (Princeton)BET1
Genetics Home Reference (NIH)BET1
Genomic and cartography
GoldenPath hg38 (UCSC)BET1  -     chr7:93993245-94004355 -  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BET1  -     7q21.3   [Description]    (hg19-Feb_2009)
GoldenPathBET1 - 7q21.3 [CytoView hg19]  BET1 - 7q21.3 [CytoView hg38]
ImmunoBaseENSG00000105829
Genome Data Viewer NCBIBET1 [Mapview hg19]  
OMIM605456   
Gene and transcription
Genbank (Entrez)AA812913 AF007551 AK313984 BC000899 BC012595
RefSeq transcript (Entrez)NM_001317739 NM_005868
Consensus coding sequences : CCDS (NCBI)BET1
Gene ExpressionBET1 [ NCBI-GEO ]   BET1 [ EBI - ARRAY_EXPRESS ]   BET1 [ SEEK ]   BET1 [ MEM ]
Gene Expression Viewer (FireBrowse)BET1 [ Firebrowse - Broad ]
GenevisibleExpression of BET1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10282
GTEX Portal (Tissue expression)BET1
Human Protein AtlasENSG00000105829-BET1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15155   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15155  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15155
PhosPhoSitePlusO15155
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)BET1    BET1_SNARE    T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)BET1
PDB (RSDB)3EGX   
PDB Europe3EGX   
PDB (PDBSum)3EGX   
PDB (IMB)3EGX   
Structural Biology KnowledgeBase3EGX   
SCOP (Structural Classification of Proteins)3EGX   
CATH (Classification of proteins structures)3EGX   
SuperfamilyO15155
AlphaFold pdb e-kbO15155   
Human Protein Atlas [tissue]ENSG00000105829-BET1 [tissue]
HPRD16107
Protein Interaction databases
DIP (DOE-UCLA)O15155
IntAct (EBI)O15155
BioGRIDBET1
STRING (EMBL)BET1
ZODIACBET1
Ontologies - Pathways
QuickGOO15155
Ontology : AmiGOGolgi trans cisterna  Golgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  protein transport  membrane  transport vesicle  integral component of Golgi membrane  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  vesicle fusion with Golgi apparatus  
Ontology : EGO-EBIGolgi trans cisterna  Golgi membrane  SNAP receptor activity  protein binding  endoplasmic reticulum membrane  endoplasmic reticulum to Golgi vesicle-mediated transport  protein transport  membrane  transport vesicle  integral component of Golgi membrane  SNARE complex  endoplasmic reticulum-Golgi intermediate compartment membrane  vesicle fusion with Golgi apparatus  
Pathways : KEGGKEGG_SNARE_INTERACTIONS_IN_VESICULAR_TRANSPORT   
NDEx NetworkBET1
Atlas of Cancer Signalling NetworkBET1
Wikipedia pathwaysBET1
Orthology - Evolution
OrthoDB10282
GeneTree (enSembl)ENSG00000105829
Phylogenetic Trees/Animal Genes : TreeFamBET1
Homologs : HomoloGeneBET1
Homology/Alignments : Family Browser (UCSC)BET1
Gene fusions - Rearrangements
Fusion : QuiverBET1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBET1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BET1
dbVarBET1
ClinVarBET1
MonarchBET1
1000_GenomesBET1 
Exome Variant ServerBET1
GNOMAD BrowserENSG00000105829
Varsome BrowserBET1
ACMGBET1 variants
VarityO15155
Genomic Variants (DGV)BET1 [DGVbeta]
DECIPHERBET1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBET1 
Mutations
ICGC Data PortalBET1 
TCGA Data PortalBET1 
Broad Tumor PortalBET1
OASIS PortalBET1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBET1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBET1
Mutations and Diseases : HGMDBET1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBET1
DgiDB (Drug Gene Interaction Database)BET1
DoCM (Curated mutations)BET1
CIViC (Clinical Interpretations of Variants in Cancer)BET1
Cancer3DBET1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605456   
Orphanet
DisGeNETBET1
MedgenBET1
Genetic Testing Registry BET1
NextProtO15155 [Medical]
GENETestsBET1
Target ValidationBET1
Huge Navigator BET1 [HugePedia]
ClinGenBET1
Clinical trials, drugs, therapy
MyCancerGenomeBET1
Protein Interactions : CTDBET1
Pharm GKB GenePA25338
PharosO15155
Clinical trialBET1
Miscellaneous
canSAR (ICR)BET1
HarmonizomeBET1
ARCHS4BET1
DataMed IndexBET1
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jan 20 12:24:27 CET 2022

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