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BET1 (Bet1 golgi vesicular membrane trafficking protein)

Identity

Alias_namesBet1 (S. cerevisiae) homolog
BET1 homolog (S. cerevisiae)
blocked early in transport 1 homolog (S. cerevisiae)
Alias_symbol (synonym)hbet1
Other aliasHBET1
HGNC (Hugo) BET1
LocusID (NCBI) 10282
Atlas_Id 56255
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 93993242 and ends at 94004382 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL26A1 (7q22.1) / BET1 (7q21.3)PHTF2 (7q11.23) / BET1 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BET1   14562
Cards
Entrez_Gene (NCBI)BET1  10282  Bet1 golgi vesicular membrane trafficking protein
AliasesHBET1
GeneCards (Weizmann)BET1
Ensembl hg19 (Hinxton)ENSG00000105829 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105829 [Gene_View]  chr7:93993242-94004382 [Contig_View]  BET1 [Vega]
ICGC DataPortalENSG00000105829
TCGA cBioPortalBET1
AceView (NCBI)BET1
Genatlas (Paris)BET1
WikiGenes10282
SOURCE (Princeton)BET1
Genetics Home Reference (NIH)BET1
Genomic and cartography
GoldenPath hg38 (UCSC)BET1  -     chr7:93993242-94004382 -  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BET1  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblBET1 - 7q21.3 [CytoView hg19]  BET1 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIBET1 [Mapview hg19]  BET1 [Mapview hg38]
OMIM605456   
Gene and transcription
Genbank (Entrez)AA812913 AF007551 AK313984 BC000899 BC012595
RefSeq transcript (Entrez)NM_001317739 NM_005868
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BET1
Cluster EST : UnigeneHs.489132 [ NCBI ]
CGAP (NCI)Hs.489132
Alternative Splicing GalleryENSG00000105829
Gene ExpressionBET1 [ NCBI-GEO ]   BET1 [ EBI - ARRAY_EXPRESS ]   BET1 [ SEEK ]   BET1 [ MEM ]
Gene Expression Viewer (FireBrowse)BET1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10282
GTEX Portal (Tissue expression)BET1
Protein : pattern, domain, 3D structure
UniProt/SwissProtO15155   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO15155  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO15155
Splice isoforms : SwissVarO15155
PhosPhoSitePlusO15155
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)t_SNARE (SM00397)  
Conserved Domain (NCBI)BET1
DMDM Disease mutations10282
Blocks (Seattle)BET1
PDB (SRS)3EGX   
PDB (PDBSum)3EGX   
PDB (IMB)3EGX   
PDB (RSDB)3EGX   
Structural Biology KnowledgeBase3EGX   
SCOP (Structural Classification of Proteins)3EGX   
CATH (Classification of proteins structures)3EGX   
SuperfamilyO15155
Human Protein AtlasENSG00000105829
Peptide AtlasO15155
HPRD16107
IPIIPI00740027   IPI00924776   IPI00924549   IPI00924479   IPI00470941   
Protein Interaction databases
DIP (DOE-UCLA)O15155
IntAct (EBI)O15155
FunCoupENSG00000105829
BioGRIDBET1
STRING (EMBL)BET1
ZODIACBET1
Ontologies - Pathways
QuickGOO15155
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum membrane  cis-Golgi network  ER to Golgi vesicle-mediated transport  protein transport  membrane  integral component of membrane  syntaxin binding  transport vesicle  SNARE complex  Golgi cisterna  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  vesicle fusion with Golgi apparatus  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum membrane  cis-Golgi network  ER to Golgi vesicle-mediated transport  protein transport  membrane  integral component of membrane  syntaxin binding  transport vesicle  SNARE complex  Golgi cisterna  endoplasmic reticulum-Golgi intermediate compartment membrane  COPII vesicle coating  vesicle fusion with Golgi apparatus  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkBET1
Atlas of Cancer Signalling NetworkBET1
Wikipedia pathwaysBET1
Orthology - Evolution
OrthoDB10282
GeneTree (enSembl)ENSG00000105829
Phylogenetic Trees/Animal Genes : TreeFamBET1
HOVERGENO15155
HOGENOMO15155
Homologs : HomoloGeneBET1
Homology/Alignments : Family Browser (UCSC)BET1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBET1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BET1
dbVarBET1
ClinVarBET1
1000_GenomesBET1 
Exome Variant ServerBET1
ExAC (Exome Aggregation Consortium)BET1 (select the gene name)
Genetic variants : HAPMAP10282
Genomic Variants (DGV)BET1 [DGVbeta]
DECIPHERBET1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBET1 
Mutations
ICGC Data PortalBET1 
TCGA Data PortalBET1 
Broad Tumor PortalBET1
OASIS PortalBET1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBET1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBET1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BET1
DgiDB (Drug Gene Interaction Database)BET1
DoCM (Curated mutations)BET1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BET1 (select a term)
intoGenBET1
Cancer3DBET1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605456   
Orphanet
MedgenBET1
Genetic Testing Registry BET1
NextProtO15155 [Medical]
TSGene10282
GENETestsBET1
Target ValidationBET1
Huge Navigator BET1 [HugePedia]
snp3D : Map Gene to Disease10282
BioCentury BCIQBET1
ClinGenBET1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10282
Chemical/Pharm GKB GenePA25338
Clinical trialBET1
Miscellaneous
canSAR (ICR)BET1 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBET1
EVEXBET1
GoPubMedBET1
iHOPBET1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:47:56 CEST 2017

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