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BET1L (Bet1 golgi vesicular membrane trafficking protein like)

Identity

Alias_namesblocked early in transport 1 homolog (S. cerevisiae) like
blocked early in transport 1 homolog (S. cerevisiae)-like
Bet1 golgi vesicular membrane trafficking protein-like
Alias_symbol (synonym)GS15
GOLIM3
Other aliasBET1L1
HSPC197
HGNC (Hugo) BET1L
LocusID (NCBI) 51272
Atlas_Id 54154
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 202924 and ends at 207422 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BET1L (11p15.5) / BET1L (11p15.5)FBXO25 (8p23.3) / BET1L (11p15.5)HLA-G (6p22.1) / BET1L (11p15.5)
SND1 (7q32.1) / BET1L (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BET1L   19348
Cards
Entrez_Gene (NCBI)BET1L  51272  Bet1 golgi vesicular membrane trafficking protein like
AliasesBET1L1; GOLIM3; GS15; HSPC197
GeneCards (Weizmann)BET1L
Ensembl hg19 (Hinxton)ENSG00000177951 [Gene_View]  chr11:202924-207422 [Contig_View]  BET1L [Vega]
Ensembl hg38 (Hinxton)ENSG00000177951 [Gene_View]  chr11:202924-207422 [Contig_View]  BET1L [Vega]
ICGC DataPortalENSG00000177951
TCGA cBioPortalBET1L
AceView (NCBI)BET1L
Genatlas (Paris)BET1L
WikiGenes51272
SOURCE (Princeton)BET1L
Genetics Home Reference (NIH)BET1L
Genomic and cartography
GoldenPath hg19 (UCSC)BET1L  -     chr11:202924-207422 -  11p15.5   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BET1L  -     11p15.5   [Description]    (hg38-Dec_2013)
EnsemblBET1L - 11p15.5 [CytoView hg19]  BET1L - 11p15.5 [CytoView hg38]
Mapping of homologs : NCBIBET1L [Mapview hg19]  BET1L [Mapview hg38]
OMIM615417   
Gene and transcription
Genbank (Entrez)AF151031 AF234160 AK022958 AK314273 AL833842
RefSeq transcript (Entrez)NM_001098787 NM_016465 NM_016526
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)BET1L
Cluster EST : UnigeneHs.414418 [ NCBI ]
CGAP (NCI)Hs.414418
Alternative Splicing GalleryENSG00000177951
Gene ExpressionBET1L [ NCBI-GEO ]   BET1L [ EBI - ARRAY_EXPRESS ]   BET1L [ SEEK ]   BET1L [ MEM ]
Gene Expression Viewer (FireBrowse)BET1L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51272
GTEX Portal (Tissue expression)BET1L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYM9
Splice isoforms : SwissVarQ9NYM9
PhosPhoSitePlusQ9NYM9
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BET1L
DMDM Disease mutations51272
Blocks (Seattle)BET1L
SuperfamilyQ9NYM9
Human Protein AtlasENSG00000177951
Peptide AtlasQ9NYM9
HPRD16547
IPIIPI00009772   IPI00234905   IPI00009354   IPI00396263   IPI00746666   IPI00939527   IPI00984933   IPI00984435   
Protein Interaction databases
DIP (DOE-UCLA)Q9NYM9
IntAct (EBI)Q9NYM9
FunCoupENSG00000177951
BioGRIDBET1L
STRING (EMBL)BET1L
ZODIACBET1L
Ontologies - Pathways
QuickGOQ9NYM9
Ontology : AmiGOGolgi membrane  SNAP receptor activity  endosome  Golgi apparatus  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  protein transport  membrane  integral component of Golgi membrane  SNARE complex  retrograde transport, endosome to Golgi  membrane fusion  membrane fusion  regulation of retrograde vesicle-mediated transport, Golgi to ER  
Ontology : EGO-EBIGolgi membrane  SNAP receptor activity  endosome  Golgi apparatus  Golgi stack  cytosol  ER to Golgi vesicle-mediated transport  protein transport  membrane  integral component of Golgi membrane  SNARE complex  retrograde transport, endosome to Golgi  membrane fusion  membrane fusion  regulation of retrograde vesicle-mediated transport, Golgi to ER  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkBET1L
Atlas of Cancer Signalling NetworkBET1L
Wikipedia pathwaysBET1L
Orthology - Evolution
OrthoDB51272
GeneTree (enSembl)ENSG00000177951
Phylogenetic Trees/Animal Genes : TreeFamBET1L
HOVERGENQ9NYM9
HOGENOMQ9NYM9
Homologs : HomoloGeneBET1L
Homology/Alignments : Family Browser (UCSC)BET1L
Gene fusions - Rearrangements
Fusion : MitelmanFBXO25/BET1L [8p23.3/11p15.5]  [t(8;11)(p23;p15)]  
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBET1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BET1L
dbVarBET1L
ClinVarBET1L
1000_GenomesBET1L 
Exome Variant ServerBET1L
ExAC (Exome Aggregation Consortium)BET1L (select the gene name)
Genetic variants : HAPMAP51272
Genomic Variants (DGV)BET1L [DGVbeta]
DECIPHER (Syndromes)11:202924-207422  ENSG00000177951
CONAN: Copy Number AnalysisBET1L 
Mutations
ICGC Data PortalBET1L 
TCGA Data PortalBET1L 
Broad Tumor PortalBET1L
OASIS PortalBET1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBET1L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBET1L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BET1L
DgiDB (Drug Gene Interaction Database)BET1L
DoCM (Curated mutations)BET1L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BET1L (select a term)
intoGenBET1L
Cancer3DBET1L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615417   
Orphanet
MedgenBET1L
Genetic Testing Registry BET1L
NextProtQ9NYM9 [Medical]
TSGene51272
GENETestsBET1L
Huge Navigator BET1L [HugePedia]
snp3D : Map Gene to Disease51272
BioCentury BCIQBET1L
ClinGenBET1L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51272
Chemical/Pharm GKB GenePA134970036
Clinical trialBET1L
Miscellaneous
canSAR (ICR)BET1L (select the gene name)
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBET1L
EVEXBET1L
GoPubMedBET1L
iHOPBET1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:57:32 CET 2017

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