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BET1L (Bet1 golgi vesicular membrane trafficking protein like)

Identity

Alias (NCBI)BET1L1
GOLIM3
GS15
HSPC197
HGNC (Hugo) BET1L
HGNC Alias symbGS15
GOLIM3
HGNC Alias namegolgi integral membrane protein 3
HGNC Previous nameblocked early in transport 1 homolog (S. cerevisiae) like
 blocked early in transport 1 homolog (S. cerevisiae)-like
 Bet1 golgi vesicular membrane trafficking protein-like
LocusID (NCBI) 51272
Atlas_Id 54154
Location 11p15.5  [Link to chromosome band 11p15]
Location_base_pair Starts at 202924 and ends at 207422 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BET1L (11p15.5) / BET1L (11p15.5)FBXO25 (8p23.3) / BET1L (11p15.5)HLA-G (6p22.1) / BET1L (11p15.5)
SND1 (7q32.1) / BET1L (11p15.5)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BET1L   19348
Cards
Entrez_Gene (NCBI)BET1L    Bet1 golgi vesicular membrane trafficking protein like
AliasesBET1L1; GOLIM3; GS15; HSPC197
GeneCards (Weizmann)BET1L
Ensembl hg19 (Hinxton)ENSG00000177951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177951 [Gene_View]  ENSG00000177951 [Sequence]  chr11:202924-207422 [Contig_View]  BET1L [Vega]
ICGC DataPortalENSG00000177951
TCGA cBioPortalBET1L
AceView (NCBI)BET1L
Genatlas (Paris)BET1L
SOURCE (Princeton)BET1L
Genetics Home Reference (NIH)BET1L
Genomic and cartography
GoldenPath hg38 (UCSC)BET1L  -     chr11:202924-207422 -  11p15.5   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BET1L  -     11p15.5   [Description]    (hg19-Feb_2009)
GoldenPathBET1L - 11p15.5 [CytoView hg19]  BET1L - 11p15.5 [CytoView hg38]
ImmunoBaseENSG00000177951
Genome Data Viewer NCBIBET1L [Mapview hg19]  
OMIM615417   
Gene and transcription
Genbank (Entrez)AF151031 AF234160 AK022958 AK314273 AL833842
RefSeq transcript (Entrez)NM_001098787 NM_016465 NM_016526
Consensus coding sequences : CCDS (NCBI)BET1L
Gene ExpressionBET1L [ NCBI-GEO ]   BET1L [ EBI - ARRAY_EXPRESS ]   BET1L [ SEEK ]   BET1L [ MEM ]
Gene Expression Viewer (FireBrowse)BET1L [ Firebrowse - Broad ]
GenevisibleExpression of BET1L in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51272
GTEX Portal (Tissue expression)BET1L
Human Protein AtlasENSG00000177951-BET1L [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NYM9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NYM9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NYM9
PhosPhoSitePlusQ9NYM9
Domaine pattern : Prosite (Expaxy)T_SNARE (PS50192)   
Domains : Interpro (EBI)BET1    BET1_SNARE    T_SNARE_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BET1L
SuperfamilyQ9NYM9
AlphaFold pdb e-kbQ9NYM9   
Human Protein Atlas [tissue]ENSG00000177951-BET1L [tissue]
HPRD16547
Protein Interaction databases
DIP (DOE-UCLA)Q9NYM9
IntAct (EBI)Q9NYM9
BioGRIDBET1L
STRING (EMBL)BET1L
ZODIACBET1L
Ontologies - Pathways
QuickGOQ9NYM9
Ontology : AmiGOGolgi trans cisterna  Golgi membrane  SNAP receptor activity  SNAP receptor activity  endosome  Golgi apparatus  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  protein transport  membrane  integral component of Golgi membrane  SNARE complex  SNARE complex  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  membrane fusion  regulation of retrograde vesicle-mediated transport, Golgi to ER  regulation of retrograde vesicle-mediated transport, Golgi to ER  
Ontology : EGO-EBIGolgi trans cisterna  Golgi membrane  SNAP receptor activity  SNAP receptor activity  endosome  Golgi apparatus  cytosol  endoplasmic reticulum to Golgi vesicle-mediated transport  protein transport  membrane  integral component of Golgi membrane  SNARE complex  SNARE complex  retrograde transport, endosome to Golgi  retrograde transport, endosome to Golgi  membrane fusion  regulation of retrograde vesicle-mediated transport, Golgi to ER  regulation of retrograde vesicle-mediated transport, Golgi to ER  
Pathways : KEGGSNARE interactions in vesicular transport   
NDEx NetworkBET1L
Atlas of Cancer Signalling NetworkBET1L
Wikipedia pathwaysBET1L
Orthology - Evolution
OrthoDB51272
GeneTree (enSembl)ENSG00000177951
Phylogenetic Trees/Animal Genes : TreeFamBET1L
Homologs : HomoloGeneBET1L
Homology/Alignments : Family Browser (UCSC)BET1L
Gene fusions - Rearrangements
Fusion : MitelmanFBXO25/BET1L [8p23.3/11p15.5]  
Fusion : QuiverBET1L
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBET1L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BET1L
dbVarBET1L
ClinVarBET1L
MonarchBET1L
1000_GenomesBET1L 
Exome Variant ServerBET1L
GNOMAD BrowserENSG00000177951
Varsome BrowserBET1L
ACMGBET1L variants
VarityQ9NYM9
Genomic Variants (DGV)BET1L [DGVbeta]
DECIPHERBET1L [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBET1L 
Mutations
ICGC Data PortalBET1L 
TCGA Data PortalBET1L 
Broad Tumor PortalBET1L
OASIS PortalBET1L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBET1L  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBET1L
Mutations and Diseases : HGMDBET1L
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBET1L
DgiDB (Drug Gene Interaction Database)BET1L
DoCM (Curated mutations)BET1L
CIViC (Clinical Interpretations of Variants in Cancer)BET1L
Cancer3DBET1L
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615417   
Orphanet
DisGeNETBET1L
MedgenBET1L
Genetic Testing Registry BET1L
NextProtQ9NYM9 [Medical]
GENETestsBET1L
Target ValidationBET1L
Huge Navigator BET1L [HugePedia]
ClinGenBET1L
Clinical trials, drugs, therapy
MyCancerGenomeBET1L
Protein Interactions : CTDBET1L
Pharm GKB GenePA134970036
PharosQ9NYM9
Clinical trialBET1L
Miscellaneous
canSAR (ICR)BET1L
HarmonizomeBET1L
DataMed IndexBET1L
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBET1L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:01:09 CEST 2021

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