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BEX3 (brain expressed X-linked 3)

Identity

Alias_namesNGFRAP1
nerve growth factor receptor (TNFRSF16) associated protein 1
Alias_symbol (synonym)HGR74
Bex
NADE
DXS6984E
Other alias
HGNC (Hugo) BEX3
LocusID (NCBI) 27018
Atlas_Id 78298
Location Xq22.2  [Link to chromosome band Xq22]
Location_base_pair Starts at 103376323 and ends at 103378164 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEX3   13388
Cards
Entrez_Gene (NCBI)BEX3  27018  brain expressed X-linked 3
AliasesBex; DXS6984E; HGR74; NADE; 
NGFRAP1
GeneCards (Weizmann)BEX3
Ensembl hg19 (Hinxton)ENSG00000166681 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166681 [Gene_View]  chrX:103376323-103378164 [Contig_View]  BEX3 [Vega]
ICGC DataPortalENSG00000166681
TCGA cBioPortalBEX3
AceView (NCBI)BEX3
Genatlas (Paris)BEX3
WikiGenes27018
SOURCE (Princeton)BEX3
Genetics Home Reference (NIH)BEX3
Genomic and cartography
GoldenPath hg38 (UCSC)BEX3  -     chrX:103376323-103378164 +  Xq22.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEX3  -     Xq22.2   [Description]    (hg19-Feb_2009)
EnsemblBEX3 - Xq22.2 [CytoView hg19]  BEX3 - Xq22.2 [CytoView hg38]
Mapping of homologs : NCBIBEX3 [Mapview hg19]  BEX3 [Mapview hg38]
OMIM300361   
Gene and transcription
Genbank (Entrez)AF187064 AI929106 AK057859 AK315371 AY833562
RefSeq transcript (Entrez)NM_001282674 NM_014380 NM_206915 NM_206917
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEX3
Cluster EST : UnigeneHs.448588 [ NCBI ]
CGAP (NCI)Hs.448588
Alternative Splicing GalleryENSG00000166681
Gene ExpressionBEX3 [ NCBI-GEO ]   BEX3 [ EBI - ARRAY_EXPRESS ]   BEX3 [ SEEK ]   BEX3 [ MEM ]
Gene Expression Viewer (FireBrowse)BEX3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27018
GTEX Portal (Tissue expression)BEX3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ00994   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ00994  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ00994
Splice isoforms : SwissVarQ00994
PhosPhoSitePlusQ00994
Domains : Interpro (EBI)BEX    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)BEX3
DMDM Disease mutations27018
Blocks (Seattle)BEX3
PDB (SRS)1SA6   
PDB (PDBSum)1SA6   
PDB (IMB)1SA6   
PDB (RSDB)1SA6   
Structural Biology KnowledgeBase1SA6   
SCOP (Structural Classification of Proteins)1SA6   
CATH (Classification of proteins structures)1SA6   
SuperfamilyQ00994
Human Protein AtlasENSG00000166681
Peptide AtlasQ00994
HPRD02291
IPIIPI00025492   IPI00383399   IPI00410144   
Protein Interaction databases
DIP (DOE-UCLA)Q00994
IntAct (EBI)Q00994
FunCoupENSG00000166681
BioGRIDBEX3
STRING (EMBL)BEX3
ZODIACBEX3
Ontologies - Pathways
QuickGOQ00994
Ontology : AmiGOnerve growth factor receptor binding  protein binding  nucleus  cytosol  cytosol  activation of cysteine-type endopeptidase activity involved in apoptotic process  multicellular organism development  extrinsic apoptotic signaling pathway via death domain receptors  cysteine-type endopeptidase activator activity involved in apoptotic process  identical protein binding  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  regulation of cysteine-type endopeptidase activity involved in apoptotic process  metal ion binding  
Ontology : EGO-EBInerve growth factor receptor binding  protein binding  nucleus  cytosol  cytosol  activation of cysteine-type endopeptidase activity involved in apoptotic process  multicellular organism development  extrinsic apoptotic signaling pathway via death domain receptors  cysteine-type endopeptidase activator activity involved in apoptotic process  identical protein binding  negative regulation of cysteine-type endopeptidase activity involved in apoptotic process  regulation of cysteine-type endopeptidase activity involved in apoptotic process  metal ion binding  
NDEx NetworkBEX3
Atlas of Cancer Signalling NetworkBEX3
Wikipedia pathwaysBEX3
Orthology - Evolution
OrthoDB27018
GeneTree (enSembl)ENSG00000166681
Phylogenetic Trees/Animal Genes : TreeFamBEX3
HOVERGENQ00994
HOGENOMQ00994
Homologs : HomoloGeneBEX3
Homology/Alignments : Family Browser (UCSC)BEX3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEX3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEX3
dbVarBEX3
ClinVarBEX3
1000_GenomesBEX3 
Exome Variant ServerBEX3
ExAC (Exome Aggregation Consortium)BEX3 (select the gene name)
Genetic variants : HAPMAP27018
Genomic Variants (DGV)BEX3 [DGVbeta]
DECIPHERBEX3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEX3 
Mutations
ICGC Data PortalBEX3 
TCGA Data PortalBEX3 
Broad Tumor PortalBEX3
OASIS PortalBEX3 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBEX3
BioMutasearch BEX3
DgiDB (Drug Gene Interaction Database)BEX3
DoCM (Curated mutations)BEX3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEX3 (select a term)
intoGenBEX3
Cancer3DBEX3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300361   
Orphanet
MedgenBEX3
Genetic Testing Registry BEX3
NextProtQ00994 [Medical]
TSGene27018
GENETestsBEX3
Target ValidationBEX3
Huge Navigator BEX3 [HugePedia]
snp3D : Map Gene to Disease27018
BioCentury BCIQBEX3
ClinGenBEX3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27018
Chemical/Pharm GKB GenePA31616
Clinical trialBEX3
Miscellaneous
canSAR (ICR)BEX3 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEX3
EVEXBEX3
GoPubMedBEX3
iHOPBEX3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:18 CEST 2017

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