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BEX4 (brain expressed X-linked 4)

Identity

Alias_namesBEXL1
brain expressed X-linked-like 1
BEX family member 4
Alias_symbol (synonym)FLJ10097
Other alias
HGNC (Hugo) BEX4
LocusID (NCBI) 56271
Atlas_Id 60744
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 103215092 and ends at 103217200 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BEX4 (Xq22.1) / FAM13A (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEX4   25475
Cards
Entrez_Gene (NCBI)BEX4  56271  brain expressed X-linked 4
AliasesBEXL1
GeneCards (Weizmann)BEX4
Ensembl hg19 (Hinxton)ENSG00000102409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000102409 [Gene_View]  chrX:103215092-103217200 [Contig_View]  BEX4 [Vega]
ICGC DataPortalENSG00000102409
TCGA cBioPortalBEX4
AceView (NCBI)BEX4
Genatlas (Paris)BEX4
WikiGenes56271
SOURCE (Princeton)BEX4
Genetics Home Reference (NIH)BEX4
Genomic and cartography
GoldenPath hg38 (UCSC)BEX4  -     chrX:103215092-103217200 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEX4  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblBEX4 - Xq22.1 [CytoView hg19]  BEX4 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIBEX4 [Mapview hg19]  BEX4 [Mapview hg38]
OMIM300692   
Gene and transcription
Genbank (Entrez)AI199874 AK000959 AL544124 AV726729 AY833563
RefSeq transcript (Entrez)NM_001080425 NM_001127688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEX4
Cluster EST : UnigeneHs.184736 [ NCBI ]
CGAP (NCI)Hs.184736
Alternative Splicing GalleryENSG00000102409
Gene ExpressionBEX4 [ NCBI-GEO ]   BEX4 [ EBI - ARRAY_EXPRESS ]   BEX4 [ SEEK ]   BEX4 [ MEM ]
Gene Expression Viewer (FireBrowse)BEX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56271
GTEX Portal (Tissue expression)BEX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWD9
Splice isoforms : SwissVarQ9NWD9
PhosPhoSitePlusQ9NWD9
Domains : Interpro (EBI)BEX    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)BEX4
DMDM Disease mutations56271
Blocks (Seattle)BEX4
SuperfamilyQ9NWD9
Human Protein AtlasENSG00000102409
Peptide AtlasQ9NWD9
IPIIPI00739732   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWD9
IntAct (EBI)Q9NWD9
FunCoupENSG00000102409
BioGRIDBEX4
STRING (EMBL)BEX4
ZODIACBEX4
Ontologies - Pathways
QuickGOQ9NWD9
Ontology : AmiGOnucleus  cytoplasm  
Ontology : EGO-EBInucleus  cytoplasm  
NDEx NetworkBEX4
Atlas of Cancer Signalling NetworkBEX4
Wikipedia pathwaysBEX4
Orthology - Evolution
OrthoDB56271
GeneTree (enSembl)ENSG00000102409
Phylogenetic Trees/Animal Genes : TreeFamBEX4
HOVERGENQ9NWD9
HOGENOMQ9NWD9
Homologs : HomoloGeneBEX4
Homology/Alignments : Family Browser (UCSC)BEX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEX4
dbVarBEX4
ClinVarBEX4
1000_GenomesBEX4 
Exome Variant ServerBEX4
ExAC (Exome Aggregation Consortium)BEX4 (select the gene name)
Genetic variants : HAPMAP56271
Genomic Variants (DGV)BEX4 [DGVbeta]
DECIPHERBEX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEX4 
Mutations
ICGC Data PortalBEX4 
TCGA Data PortalBEX4 
Broad Tumor PortalBEX4
OASIS PortalBEX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEX4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch BEX4
DgiDB (Drug Gene Interaction Database)BEX4
DoCM (Curated mutations)BEX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEX4 (select a term)
intoGenBEX4
Cancer3DBEX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300692   
Orphanet
MedgenBEX4
Genetic Testing Registry BEX4
NextProtQ9NWD9 [Medical]
TSGene56271
GENETestsBEX4
Target ValidationBEX4
Huge Navigator BEX4 [HugePedia]
snp3D : Map Gene to Disease56271
BioCentury BCIQBEX4
ClinGenBEX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56271
Chemical/Pharm GKB GenePA162377543
Clinical trialBEX4
Miscellaneous
canSAR (ICR)BEX4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEX4
EVEXBEX4
GoPubMedBEX4
iHOPBEX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:18 CEST 2017

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