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BEX4 (brain expressed X-linked 4)

Identity

Other aliasBEXL1
HGNC (Hugo) BEX4
LocusID (NCBI) 56271
Atlas_Id 57212
Location Xq22.1  [Link to chromosome band Xq22]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BEX4 (Xq22.1) / FAM13A (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEX4   25475
Cards
Entrez_Gene (NCBI)BEX4  56271  brain expressed X-linked 4
AliasesBEXL1
GeneCards (Weizmann)BEX4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  - [Contig_View]  BEX4 [Vega]
TCGA cBioPortalBEX4
AceView (NCBI)BEX4
Genatlas (Paris)BEX4
WikiGenes56271
SOURCE (Princeton)BEX4
Genetics Home Reference (NIH)BEX4
Genomic and cartography
GoldenPath hg38 (UCSC)BEX4  -  
GoldenPath hg19 (UCSC)BEX4  -  
EnsemblBEX4 - [CytoView hg19]  BEX4 - [CytoView hg38]
Mapping of homologs : NCBIBEX4 [Mapview hg19]  BEX4 [Mapview hg38]
OMIM300692   
Gene and transcription
Genbank (Entrez)AI199874 AK000959 AL544124 AV726729 AY833563
RefSeq transcript (Entrez)NM_001080425 NM_001127688
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEX4
Cluster EST : UnigeneHs.184736 [ NCBI ]
CGAP (NCI)Hs.184736
Gene ExpressionBEX4 [ NCBI-GEO ]   BEX4 [ EBI - ARRAY_EXPRESS ]   BEX4 [ SEEK ]   BEX4 [ MEM ]
Gene Expression Viewer (FireBrowse)BEX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)56271
GTEX Portal (Tissue expression)BEX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWD9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWD9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWD9
Splice isoforms : SwissVarQ9NWD9
PhosPhoSitePlusQ9NWD9
Domains : Interpro (EBI)BEX    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)BEX4
DMDM Disease mutations56271
Blocks (Seattle)BEX4
SuperfamilyQ9NWD9
Peptide AtlasQ9NWD9
IPIIPI00739732   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWD9
IntAct (EBI)Q9NWD9
BioGRIDBEX4
STRING (EMBL)BEX4
ZODIACBEX4
Ontologies - Pathways
QuickGOQ9NWD9
Ontology : AmiGOspindle pole  nucleus  nucleus  cytoplasm  cytoplasm  microtubule  chromosome segregation  regulation of cell migration  regulation of cell proliferation  histone deacetylase binding  alpha-tubulin binding  negative regulation of tubulin deacetylation  
Ontology : EGO-EBIspindle pole  nucleus  nucleus  cytoplasm  cytoplasm  microtubule  chromosome segregation  regulation of cell migration  regulation of cell proliferation  histone deacetylase binding  alpha-tubulin binding  negative regulation of tubulin deacetylation  
NDEx NetworkBEX4
Atlas of Cancer Signalling NetworkBEX4
Wikipedia pathwaysBEX4
Orthology - Evolution
OrthoDB56271
Phylogenetic Trees/Animal Genes : TreeFamBEX4
HOVERGENQ9NWD9
HOGENOMQ9NWD9
Homologs : HomoloGeneBEX4
Homology/Alignments : Family Browser (UCSC)BEX4
Gene fusions - Rearrangements
Fusion: Tumor Portal BEX4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEX4
dbVarBEX4
ClinVarBEX4
1000_GenomesBEX4 
Exome Variant ServerBEX4
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP56271
Genomic Variants (DGV)BEX4 [DGVbeta]
DECIPHERBEX4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEX4 
Mutations
ICGC Data PortalBEX4 
TCGA Data PortalBEX4 
Broad Tumor PortalBEX4
OASIS PortalBEX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEX4
BioMutasearch BEX4
DgiDB (Drug Gene Interaction Database)BEX4
DoCM (Curated mutations)BEX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEX4 (select a term)
intoGenBEX4
Cancer3DBEX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300692   
Orphanet
MedgenBEX4
Genetic Testing Registry BEX4
NextProtQ9NWD9 [Medical]
TSGene56271
GENETestsBEX4
Target ValidationBEX4
Huge Navigator BEX4 [HugePedia]
snp3D : Map Gene to Disease56271
BioCentury BCIQBEX4
ClinGenBEX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD56271
Chemical/Pharm GKB GenePA162377543
Clinical trialBEX4
Miscellaneous
canSAR (ICR)BEX4 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEX4
EVEXBEX4
GoPubMedBEX4
iHOPBEX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:41:57 CET 2017

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