Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BEX5 (brain expressed X-linked 5)

Identity

Alias_namesNGFRAP1L1
NGFRAP1-like 1
BEX family member 5
Other alias
HGNC (Hugo) BEX5
LocusID (NCBI) 340542
Atlas_Id 60745
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102153707 and ends at 102156014 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BEX5   27990
Cards
Entrez_Gene (NCBI)BEX5  340542  brain expressed X-linked 5
AliasesNGFRAP1L1
GeneCards (Weizmann)BEX5
Ensembl hg19 (Hinxton)ENSG00000184515 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184515 [Gene_View]  chrX:102153707-102156014 [Contig_View]  BEX5 [Vega]
ICGC DataPortalENSG00000184515
TCGA cBioPortalBEX5
AceView (NCBI)BEX5
Genatlas (Paris)BEX5
WikiGenes340542
SOURCE (Princeton)BEX5
Genetics Home Reference (NIH)BEX5
Genomic and cartography
GoldenPath hg38 (UCSC)BEX5  -     chrX:102153707-102156014 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BEX5  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblBEX5 - Xq22.1 [CytoView hg19]  BEX5 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIBEX5 [Mapview hg19]  BEX5 [Mapview hg38]
OMIM300693   
Gene and transcription
Genbank (Entrez)AI985090 AY833564 BC042818 BC092450 BC106955
RefSeq transcript (Entrez)NM_001012978 NM_001159560
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BEX5
Cluster EST : UnigeneHs.47209 [ NCBI ]
CGAP (NCI)Hs.47209
Alternative Splicing GalleryENSG00000184515
Gene ExpressionBEX5 [ NCBI-GEO ]   BEX5 [ EBI - ARRAY_EXPRESS ]   BEX5 [ SEEK ]   BEX5 [ MEM ]
Gene Expression Viewer (FireBrowse)BEX5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)340542
GTEX Portal (Tissue expression)BEX5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9J7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9J7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9J7
Splice isoforms : SwissVarQ5H9J7
PhosPhoSitePlusQ5H9J7
Domains : Interpro (EBI)BEX    TF_A-like/BEX   
Domain families : Pfam (Sanger)BEX (PF04538)   
Domain families : Pfam (NCBI)pfam04538   
Conserved Domain (NCBI)BEX5
DMDM Disease mutations340542
Blocks (Seattle)BEX5
SuperfamilyQ5H9J7
Human Protein AtlasENSG00000184515
Peptide AtlasQ5H9J7
HPRD18484
IPIIPI00257933   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9J7
IntAct (EBI)Q5H9J7
FunCoupENSG00000184515
BioGRIDBEX5
STRING (EMBL)BEX5
ZODIACBEX5
Ontologies - Pathways
QuickGOQ5H9J7
Ontology : AmiGOprotein binding  cytoplasm  extracellular exosome  
Ontology : EGO-EBIprotein binding  cytoplasm  extracellular exosome  
NDEx NetworkBEX5
Atlas of Cancer Signalling NetworkBEX5
Wikipedia pathwaysBEX5
Orthology - Evolution
OrthoDB340542
GeneTree (enSembl)ENSG00000184515
Phylogenetic Trees/Animal Genes : TreeFamBEX5
HOVERGENQ5H9J7
HOGENOMQ5H9J7
Homologs : HomoloGeneBEX5
Homology/Alignments : Family Browser (UCSC)BEX5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBEX5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BEX5
dbVarBEX5
ClinVarBEX5
1000_GenomesBEX5 
Exome Variant ServerBEX5
ExAC (Exome Aggregation Consortium)BEX5 (select the gene name)
Genetic variants : HAPMAP340542
Genomic Variants (DGV)BEX5 [DGVbeta]
DECIPHERBEX5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBEX5 
Mutations
ICGC Data PortalBEX5 
TCGA Data PortalBEX5 
Broad Tumor PortalBEX5
OASIS PortalBEX5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBEX5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBEX5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BEX5
DgiDB (Drug Gene Interaction Database)BEX5
DoCM (Curated mutations)BEX5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BEX5 (select a term)
intoGenBEX5
Cancer3DBEX5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300693   
Orphanet
MedgenBEX5
Genetic Testing Registry BEX5
NextProtQ5H9J7 [Medical]
TSGene340542
GENETestsBEX5
Target ValidationBEX5
Huge Navigator BEX5 [HugePedia]
snp3D : Map Gene to Disease340542
BioCentury BCIQBEX5
ClinGenBEX5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD340542
Chemical/Pharm GKB GenePA162377554
Clinical trialBEX5
Miscellaneous
canSAR (ICR)BEX5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBEX5
EVEXBEX5
GoPubMedBEX5
iHOPBEX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:02:18 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.