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BFAR (bifunctional apoptosis regulator)

Identity

Other namesBAR
RNF47
HGNC (Hugo) BFAR
LocusID (NCBI) 51283
Location 16p13.12
Location_base_pair Starts at 14726668 and ends at 14763093 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BFAR   17613
Entrez_Gene (NCBI)BFAR  51283  bifunctional apoptosis regulator
Cards
GeneCards (Weizmann)BFAR
Ensembl (Hinxton)ENSG00000103429 [Gene_View]  chr16:14726668-14763093 [Contig_View]  BFAR [Vega]
AceView (NCBI)BFAR
Genatlas (Paris)BFAR
SOURCE (Stanford)NM_016561
Genomic and cartography
GoldenPath (UCSC)BFAR  -  16p13.12   chr16:14726668-14763093 +  16p13.12   [Description]    (hg19-Feb_2009)
EnsemblBFAR - 16p13.12 [CytoView]
Mapping of homologs : NCBIBFAR [Mapview]
Gene and transcription
Genbank (Entrez)AF173003 AK291114 AK297067 AK300778 AK313890
RefSeq transcript (SRS)NM_016561
RefSeq transcript (Entrez)NM_016561
RefSeq genomic (SRS)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838343 NW_004078085
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NW_001838343 NW_004078085
Consensus coding sequences : CCDS (NCBI)BFAR
Cluster EST : UnigeneHs.435556 [ SRS ] Hs.435556 [ NCBI ]
CGAP (NCI)Hs.435556
Alternative Splicing : Fast-db (Paris)GSHG0010974
Alternative Splicing GalleryENSG00000103429
Gene ExpressionBFAR [ NCBI-GEO ]   BFAR [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZS9 (SRS) Q9NZS9 (Uniprot)
NextProtQ9NZS9
With graphics : InterProQ9NZS9
Splice isoforms : SwissVarQ9NZS9(Swissvar)
Domaine pattern : Prosite (SRS)SAM_DOMAIN (PS50105)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (SRS)SAM    SAM/pointed    SAM_type1    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Domains : Interpro (EBI)SAM    SAM/pointed    SAM_type1    Znf_RING    Znf_RING/FYVE/PHD    Znf_RING_CS   
Related proteins : CluSTrQ9NZS9
Domain families : Pfam (SRS)SAM_1 (PF00536)   
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)RING (SM00184)  SAM (SM00454)  
DMDM51283
Blocks (Seattle)Q9NZS9
Human Protein AtlasENSG00000103429
HPRD16548
IPIIPI00009811   IPI00910300   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZS9
IntAct (EBI)Q9NZS9
FunCoupENSG00000103429
REACTOMEBFAR
Protein Interaction Database51283
BioGRIDBFAR
InParanoidQ9NZS9
Interologous Interaction database Q9NZS9
IntegromeDBBFAR
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BFAR
SNP (GeneSNP Utah)BFAR
SNP : HGBaseBFAR
Genetic variants : HAPMAPBFAR
Somatic Mutations in Cancer : COSMICBFAR 
CONAN: Copy Number AnalysisBFAR 
Mutations and Diseases : HGMDBFAR
OMIM
GENETests
Disease Genetic AssociationBFAR
Huge Navigator BFAR [HugePedia]  BFAR [HugeCancerGEM]
Genomic VariantsBFAR  BFAR [DGVbeta]
ClinVarBFAR
snp3D : Map Gene to Disease51283
General knowledge
Homologs : HomoloGeneBFAR
Homology/Alignments : Family Browser (UCSC)BFAR
Phylogenetic Trees/Animal Genes : TreeFamBFAR
Chemical/Protein Interactions : CTD51283
Chemical/Pharm GKB GenePA38460
Clinical trialBFAR
Cancer Resource (Charite)ENSG00000103429
Ontology : AmiGOstructural molecule activity  endoplasmic reticulum membrane  integral to plasma membrane  apoptotic process  zinc ion binding  membrane  negative regulation of apoptotic process  
Ontology : EGO-EBIstructural molecule activity  endoplasmic reticulum membrane  integral to plasma membrane  apoptotic process  zinc ion binding  membrane  negative regulation of apoptotic process  
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
PubGeneBFAR
iHOPBFAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jun 14 17:33:26 CEST 2013
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