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BFAR (bifunctional apoptosis regulator)

Identity

Other namesBAR
RNF47
HGNC (Hugo) BFAR
LocusID (NCBI) 51283
Location 16p13.12
Location_base_pair Starts at 14726668 and ends at 14763093 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BFAR   17613
Cards
Entrez_Gene (NCBI)BFAR  51283  bifunctional apoptosis regulator
GeneCards (Weizmann)BFAR
Ensembl (Hinxton)ENSG00000103429 [Gene_View]  chr16:14726668-14763093 [Contig_View]  BFAR [Vega]
ICGC DataPortalENSG00000103429
cBioPortalBFAR
AceView (NCBI)BFAR
Genatlas (Paris)BFAR
WikiGenes51283
SOURCE (Princeton)NM_016561
Genomic and cartography
GoldenPath (UCSC)BFAR  -  16p13.12   chr16:14726668-14763093 +  16p13.12   [Description]    (hg19-Feb_2009)
EnsemblBFAR - 16p13.12 [CytoView]
Mapping of homologs : NCBIBFAR [Mapview]
Gene and transcription
Genbank (Entrez)AF173003 AK291114 AK297067 AK300778 AK313890
RefSeq transcript (Entrez)NM_016561
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_010393 NT_187607 NW_001838343 NW_004929400
Consensus coding sequences : CCDS (NCBI)BFAR
Cluster EST : UnigeneHs.435556 [ NCBI ]
CGAP (NCI)Hs.435556
Alternative Splicing : Fast-db (Paris)GSHG0010974
Alternative Splicing GalleryENSG00000103429
Gene ExpressionBFAR [ NCBI-GEO ]     BFAR [ SEEK ]   BFAR [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZS9 (Uniprot)
NextProtQ9NZS9  [Medical]
With graphics : InterProQ9NZS9
Splice isoforms : SwissVarQ9NZS9 (Swissvar)
Domaine pattern : Prosite (Expaxy)SAM_DOMAIN (PS50105)    ZF_RING_1 (PS00518)    ZF_RING_2 (PS50089)   
Domains : Interpro (EBI)SAM [organisation]   SAM/pointed [organisation]   SAM_type1 [organisation]   Znf_RING [organisation]   Znf_RING/FYVE/PHD [organisation]   Znf_RING_CS [organisation]  
Related proteins : CluSTrQ9NZS9
Domain families : Pfam (Sanger)SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00536   
Domain families : Smart (EMBL)RING (SM00184)  SAM (SM00454)  
DMDM Disease mutations51283
Blocks (Seattle)Q9NZS9
Human Protein AtlasENSG00000103429 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ9NZS9
HPRD16548
IPIIPI00009811   IPI00910300   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZS9
IntAct (EBI)Q9NZS9
FunCoupENSG00000103429
BioGRIDBFAR
InParanoidQ9NZS9
Interologous Interaction database Q9NZS9
IntegromeDBBFAR
STRING (EMBL)BFAR
Ontologies - Pathways
Ontology : AmiGOstructural molecule activity  endoplasmic reticulum membrane  integral component of plasma membrane  apoptotic process  zinc ion binding  membrane  negative regulation of apoptotic process  
Ontology : EGO-EBIstructural molecule activity  endoplasmic reticulum membrane  integral component of plasma membrane  apoptotic process  zinc ion binding  membrane  negative regulation of apoptotic process  
Protein Interaction DatabaseBFAR
Wikipedia pathwaysBFAR
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BFAR
snp3D : Map Gene to Disease51283
SNP (GeneSNP Utah)BFAR
SNP : HGBaseBFAR
Genetic variants : HAPMAPBFAR
Exome VariantBFAR
1000_GenomesBFAR 
ICGC programENSG00000103429 
Somatic Mutations in Cancer : COSMICBFAR 
CONAN: Copy Number AnalysisBFAR 
Mutations and Diseases : HGMDBFAR
Mutations and Diseases : intOGenBFAR
Genomic VariantsBFAR  BFAR [DGVbeta]
dbVarBFAR
ClinVarBFAR
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM
MedgenBFAR
GENETestsBFAR
Disease Genetic AssociationBFAR
Huge Navigator BFAR [HugePedia]  BFAR [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneBFAR
Homology/Alignments : Family Browser (UCSC)BFAR
Phylogenetic Trees/Animal Genes : TreeFamBFAR
Chemical/Protein Interactions : CTD51283
Chemical/Pharm GKB GenePA38460
Clinical trialBFAR
Cancer Resource (Charite)ENSG00000103429
Other databases
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
CoreMineBFAR
iHOPBFAR
OncoSearchBFAR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:40:41 CEST 2014

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