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BGLT3 (beta globin locus transcript 3)

Identity

Alias (NCBI)BGL3
LINC01083
lncRNA-BGL3
HGNC (Hugo) BGLT3
HGNC Alias symbLINC01083
BGL3
lncRNA-BGL3
HGNC Alias namelong intergenic non-protein coding RNA 1083
LocusID (NCBI) 103344929
Atlas_Id 60748
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5244554 and ends at 5245546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)BGLT3   49033
Cards
Entrez_Gene (NCBI)BGLT3    beta globin locus transcript 3
AliasesBGL3; LINC01083; lncRNA-BGL3
GeneCards (Weizmann)BGLT3
Ensembl hg19 (Hinxton)ENSG00000260629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260629 [Gene_View]  ENSG00000260629 [Sequence]  chr11:5244554-5245546 [Contig_View]  BGLT3 [Vega]
ICGC DataPortalENSG00000260629
TCGA cBioPortalBGLT3
AceView (NCBI)BGLT3
Genatlas (Paris)BGLT3
SOURCE (Princeton)BGLT3
Genetics Home Reference (NIH)BGLT3
Genomic and cartography
GoldenPath hg38 (UCSC)BGLT3  -     chr11:5244554-5245546 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BGLT3  -     11p15.4   [Description]    (hg19-Feb_2009)
GoldenPathBGLT3 - 11p15.4 [CytoView hg19]  BGLT3 - 11p15.4 [CytoView hg38]
ImmunoBaseENSG00000260629
genome Data Viewer NCBIBGLT3 [Mapview hg19]  
OMIM616308   
Gene and transcription
Genbank (Entrez)AY034471 BU658638 KF110790
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BGLT3
Alternative Splicing GalleryENSG00000260629
Gene ExpressionBGLT3 [ NCBI-GEO ]   BGLT3 [ EBI - ARRAY_EXPRESS ]   BGLT3 [ SEEK ]   BGLT3 [ MEM ]
Gene Expression Viewer (FireBrowse)BGLT3 [ Firebrowse - Broad ]
GenevisibleExpression of BGLT3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)103344929
GTEX Portal (Tissue expression)BGLT3
Human Protein AtlasENSG00000260629-BGLT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BGLT3
Blocks (Seattle)BGLT3
Human Protein Atlas [tissue]ENSG00000260629-BGLT3 [tissue]
Protein Interaction databases
BioGRIDBGLT3
STRING (EMBL)BGLT3
ZODIACBGLT3
Ontologies - Pathways
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBGLT3
EVEXBGLT3
GoPubMedBGLT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 16:47:01 CET 2020

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