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BGLT3 (beta globin locus transcript 3 (non-protein coding))

Identity

Alias_symbol (synonym)LINC01083
BGL3
lncRNA-BGL3
Other alias
HGNC (Hugo) BGLT3
LocusID (NCBI) 103344929
Atlas_Id 60748
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 5244554 and ends at 5245546 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BGLT3   49033
Cards
Entrez_Gene (NCBI)BGLT3  103344929  beta globin locus transcript 3 (non-protein coding)
AliasesBGL3; LINC01083; lncRNA-BGL3
GeneCards (Weizmann)BGLT3
Ensembl hg19 (Hinxton)ENSG00000260629 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260629 [Gene_View]  chr11:5244554-5245546 [Contig_View]  BGLT3 [Vega]
ICGC DataPortalENSG00000260629
TCGA cBioPortalBGLT3
AceView (NCBI)BGLT3
Genatlas (Paris)BGLT3
WikiGenes103344929
SOURCE (Princeton)BGLT3
Genetics Home Reference (NIH)BGLT3
Genomic and cartography
GoldenPath hg38 (UCSC)BGLT3  -     chr11:5244554-5245546 -  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BGLT3  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblBGLT3 - 11p15.4 [CytoView hg19]  BGLT3 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIBGLT3 [Mapview hg19]  BGLT3 [Mapview hg38]
OMIM616308   
Gene and transcription
Genbank (Entrez)AY034471 BU658638 KF110790
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BGLT3
Cluster EST : UnigeneHs.295459 [ NCBI ]
CGAP (NCI)Hs.295459
Alternative Splicing GalleryENSG00000260629
Gene ExpressionBGLT3 [ NCBI-GEO ]   BGLT3 [ EBI - ARRAY_EXPRESS ]   BGLT3 [ SEEK ]   BGLT3 [ MEM ]
Gene Expression Viewer (FireBrowse)BGLT3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103344929
GTEX Portal (Tissue expression)BGLT3
Human Protein AtlasENSG00000260629-BGLT3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BGLT3
DMDM Disease mutations103344929
Blocks (Seattle)BGLT3
Human Protein Atlas [tissue]ENSG00000260629-BGLT3 [tissue]
Protein Interaction databases
FunCoupENSG00000260629
BioGRIDBGLT3
STRING (EMBL)BGLT3
ZODIACBGLT3
Ontologies - Pathways
Huge Navigator BGLT3 [HugePedia]
snp3D : Map Gene to Disease103344929
BioCentury BCIQBGLT3
ClinGenBGLT3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103344929
Clinical trialBGLT3
Miscellaneous
canSAR (ICR)BGLT3 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBGLT3
EVEXBGLT3
GoPubMedBGLT3
iHOPBGLT3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 11:39:03 CET 2017

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