Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BGN (biglycan)

Identity

Other namesDSPG1
PG-S1
PGI
SLRR1A
HGNC (Hugo) BGN
LocusID (NCBI) 633
Location Xq28
Location_base_pair Starts at 152760347 and ends at 152775004 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BGN   1044
Cards
Entrez_Gene (NCBI)BGN  633  biglycan
GeneCards (Weizmann)BGN
Ensembl (Hinxton)ENSG00000182492 [Gene_View]  chrX:152760347-152775004 [Contig_View]  BGN [Vega]
ICGC DataPortalENSG00000182492
cBioPortalBGN
AceView (NCBI)BGN
Genatlas (Paris)BGN
WikiGenes633
SOURCE (Princeton)NM_001711
Genomic and cartography
GoldenPath (UCSC)BGN  -  Xq28   chrX:152760347-152775004 +  Xq28   [Description]    (hg19-Feb_2009)
EnsemblBGN - Xq28 [CytoView]
Mapping of homologs : NCBIBGN [Mapview]
OMIM301870   
Gene and transcription
Genbank (Entrez)AI538325 AI570205 AK092954 AK093023 AK094059
RefSeq transcript (Entrez)NM_001711
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_015961 NT_011681 NW_001842419 NW_004929448
Consensus coding sequences : CCDS (NCBI)BGN
Cluster EST : UnigeneHs.821 [ NCBI ]
CGAP (NCI)Hs.821
Alternative Splicing : Fast-db (Paris)GSHG0031901
Alternative Splicing GalleryENSG00000182492
Gene ExpressionBGN [ NCBI-GEO ]     BGN [ SEEK ]   BGN [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP21810 (Uniprot)
NextProtP21810  [Medical]
With graphics : InterProP21810
Splice isoforms : SwissVarP21810 (Swissvar)
Domaine pattern : Prosite (Expaxy)LRR (PS51450)   
Domains : Interpro (EBI)Biglycan [organisation]   Leu-rich_rpt [organisation]   LRR-contain_N [organisation]   SLRP_I_decor/aspor/byglycan [organisation]  
Related proteins : CluSTrP21810
Domain families : Pfam (Sanger)LRR_8 (PF13855)    LRRNT (PF01462)   
Domain families : Pfam (NCBI)pfam13855    pfam01462   
Domain families : Smart (EMBL)LRRNT (SM00013)  
DMDM Disease mutations633
Blocks (Seattle)P21810
Human Protein AtlasENSG00000182492 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasP21810
HPRD02359
IPIIPI00010790   IPI00903084   IPI00909494   IPI00909809   IPI00385748   IPI00639967   IPI00643384   
Protein Interaction databases
DIP (DOE-UCLA)P21810
IntAct (EBI)P21810
FunCoupENSG00000182492
BioGRIDBGN
InParanoidP21810
Interologous Interaction database P21810
IntegromeDBBGN
STRING (EMBL)BGN
Ontologies - Pathways
Ontology : AmiGOblood vessel remodeling  extracellular matrix structural constituent  glycosaminoglycan binding  extracellular region  proteinaceous extracellular matrix  Golgi lumen  carbohydrate metabolic process  biological_process  cell surface  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan  transport vesicle  extracellular matrix organization  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  extracellular matrix  extracellular matrix  sarcolemma  lysosomal lumen  small molecule metabolic process  extracellular matrix binding  extracellular vesicular exosome  
Ontology : EGO-EBIblood vessel remodeling  extracellular matrix structural constituent  glycosaminoglycan binding  extracellular region  proteinaceous extracellular matrix  Golgi lumen  carbohydrate metabolic process  biological_process  cell surface  peptide cross-linking via chondroitin 4-sulfate glycosaminoglycan  transport vesicle  extracellular matrix organization  glycosaminoglycan metabolic process  chondroitin sulfate metabolic process  chondroitin sulfate biosynthetic process  chondroitin sulfate catabolic process  dermatan sulfate biosynthetic process  extracellular matrix  extracellular matrix  sarcolemma  lysosomal lumen  small molecule metabolic process  extracellular matrix binding  extracellular vesicular exosome  
Pathways : BIOCARTASmall Leucine-rich Proteoglycan (SLRP) molecules [Genes]   
Protein Interaction DatabaseBGN
Wikipedia pathwaysBGN
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)BGN
snp3D : Map Gene to Disease633
SNP (GeneSNP Utah)BGN
SNP : HGBaseBGN
Genetic variants : HAPMAPBGN
Exome VariantBGN
1000_GenomesBGN 
ICGC programENSG00000182492 
Somatic Mutations in Cancer : COSMICBGN 
CONAN: Copy Number AnalysisBGN 
Mutations and Diseases : HGMDBGN
Genomic VariantsBGN  BGN [DGVbeta]
dbVarBGN
ClinVarBGN
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM301870   
MedgenBGN
GENETestsBGN
Disease Genetic AssociationBGN
Huge Navigator BGN [HugePedia]  BGN [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneBGN
Homology/Alignments : Family Browser (UCSC)BGN
Phylogenetic Trees/Animal Genes : TreeFamBGN
Chemical/Protein Interactions : CTD633
Chemical/Pharm GKB GenePA25346
Clinical trialBGN
Cancer Resource (Charite)ENSG00000182492
Other databases
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
CoreMineBGN
iHOPBGN
OncoSearchBGN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:44:50 CEST 2014

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.