Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BHLHB9 (basic helix-loop-helix family member b9)

Identity

Alias_symbol (synonym)p60TRP
KIAA1701
GASP3
Other alias
HGNC (Hugo) BHLHB9
LocusID (NCBI) 80823
Atlas_Id 60750
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102720714 and ends at 102752441 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BHLHB9   29353
Cards
Entrez_Gene (NCBI)BHLHB9  80823  basic helix-loop-helix family member b9
AliasesGASP3; p60TRP
GeneCards (Weizmann)BHLHB9
Ensembl hg19 (Hinxton)ENSG00000198908 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198908 [Gene_View]  chrX:102720714-102752441 [Contig_View]  BHLHB9 [Vega]
ICGC DataPortalENSG00000198908
TCGA cBioPortalBHLHB9
AceView (NCBI)BHLHB9
Genatlas (Paris)BHLHB9
WikiGenes80823
SOURCE (Princeton)BHLHB9
Genetics Home Reference (NIH)BHLHB9
Genomic and cartography
GoldenPath hg38 (UCSC)BHLHB9  -     chrX:102720714-102752441 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BHLHB9  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblBHLHB9 - Xq22.1 [CytoView hg19]  BHLHB9 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIBHLHB9 [Mapview hg19]  BHLHB9 [Mapview hg38]
OMIM300921   
Gene and transcription
Genbank (Entrez)AB051488 AF035288 AF547055 BC041409 DA104939
RefSeq transcript (Entrez)NM_001142524 NM_001142525 NM_001142526 NM_001142527 NM_001142528 NM_001142529 NM_001142530 NM_030639
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BHLHB9
Cluster EST : UnigeneHs.4276 [ NCBI ]
CGAP (NCI)Hs.4276
Alternative Splicing GalleryENSG00000198908
Gene ExpressionBHLHB9 [ NCBI-GEO ]   BHLHB9 [ EBI - ARRAY_EXPRESS ]   BHLHB9 [ SEEK ]   BHLHB9 [ MEM ]
Gene Expression Viewer (FireBrowse)BHLHB9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80823
GTEX Portal (Tissue expression)BHLHB9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI77
Splice isoforms : SwissVarQ6PI77
PhosPhoSitePlusQ6PI77
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)BHLHB9
DMDM Disease mutations80823
Blocks (Seattle)BHLHB9
SuperfamilyQ6PI77
Human Protein AtlasENSG00000198908
Peptide AtlasQ6PI77
HPRD10028
IPIIPI00513802   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI77
IntAct (EBI)Q6PI77
FunCoupENSG00000198908
BioGRIDBHLHB9
STRING (EMBL)BHLHB9
ZODIACBHLHB9
Ontologies - Pathways
QuickGOQ6PI77
Ontology : AmiGOnucleus  cytosol  learning or memory  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of neurogenesis  positive regulation of synapse assembly  positive regulation of dendritic spine morphogenesis  extracellular exosome  
Ontology : EGO-EBInucleus  cytosol  learning or memory  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of neurogenesis  positive regulation of synapse assembly  positive regulation of dendritic spine morphogenesis  extracellular exosome  
NDEx NetworkBHLHB9
Atlas of Cancer Signalling NetworkBHLHB9
Wikipedia pathwaysBHLHB9
Orthology - Evolution
OrthoDB80823
GeneTree (enSembl)ENSG00000198908
Phylogenetic Trees/Animal Genes : TreeFamBHLHB9
HOVERGENQ6PI77
HOGENOMQ6PI77
Homologs : HomoloGeneBHLHB9
Homology/Alignments : Family Browser (UCSC)BHLHB9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBHLHB9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BHLHB9
dbVarBHLHB9
ClinVarBHLHB9
1000_GenomesBHLHB9 
Exome Variant ServerBHLHB9
ExAC (Exome Aggregation Consortium)BHLHB9 (select the gene name)
Genetic variants : HAPMAP80823
Genomic Variants (DGV)BHLHB9 [DGVbeta]
DECIPHERBHLHB9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBHLHB9 
Mutations
ICGC Data PortalBHLHB9 
TCGA Data PortalBHLHB9 
Broad Tumor PortalBHLHB9
OASIS PortalBHLHB9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBHLHB9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBHLHB9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch BHLHB9
DgiDB (Drug Gene Interaction Database)BHLHB9
DoCM (Curated mutations)BHLHB9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BHLHB9 (select a term)
intoGenBHLHB9
Cancer3DBHLHB9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300921   
Orphanet
MedgenBHLHB9
Genetic Testing Registry BHLHB9
NextProtQ6PI77 [Medical]
TSGene80823
GENETestsBHLHB9
Huge Navigator BHLHB9 [HugePedia]
snp3D : Map Gene to Disease80823
BioCentury BCIQBHLHB9
ClinGenBHLHB9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80823
Chemical/Pharm GKB GenePA134895992
Clinical trialBHLHB9
Miscellaneous
canSAR (ICR)BHLHB9 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBHLHB9
EVEXBHLHB9
GoPubMedBHLHB9
iHOPBHLHB9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:01:46 CEST 2017

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