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BHMG1 (basic helix-loop-helix and HMG-box containing 1)

Identity

Alias_namesbasic helix-loop-helix and HMG box domain containing 1
Alias_symbol (synonym)HMGDC
Other alias
HGNC (Hugo) BHMG1
LocusID (NCBI) 388553
Atlas_Id 60754
Location 19q13.32  [Link to chromosome band 19q13]
Location_base_pair Starts at 45733251 and ends at 45764539 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BHMG1   44318
Cards
Entrez_Gene (NCBI)BHMG1  388553  basic helix-loop-helix and HMG-box containing 1
AliasesHMGDC
GeneCards (Weizmann)BHMG1
Ensembl hg19 (Hinxton)ENSG00000237452 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000237452 [Gene_View]  chr19:45733251-45764539 [Contig_View]  BHMG1 [Vega]
ICGC DataPortalENSG00000237452
TCGA cBioPortalBHMG1
AceView (NCBI)BHMG1
Genatlas (Paris)BHMG1
WikiGenes388553
SOURCE (Princeton)BHMG1
Genetics Home Reference (NIH)BHMG1
Genomic and cartography
GoldenPath hg38 (UCSC)BHMG1  -     chr19:45733251-45764539 +  19q13.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BHMG1  -     19q13.32   [Description]    (hg19-Feb_2009)
EnsemblBHMG1 - 19q13.32 [CytoView hg19]  BHMG1 - 19q13.32 [CytoView hg38]
Mapping of homologs : NCBIBHMG1 [Mapview hg19]  BHMG1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BI463439 BQ215245 DV080301 DV080302
RefSeq transcript (Entrez)NM_001310124
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BHMG1
Cluster EST : UnigeneHs.721835 [ NCBI ]
CGAP (NCI)Hs.721835
Alternative Splicing GalleryENSG00000237452
Gene ExpressionBHMG1 [ NCBI-GEO ]   BHMG1 [ EBI - ARRAY_EXPRESS ]   BHMG1 [ SEEK ]   BHMG1 [ MEM ]
Gene Expression Viewer (FireBrowse)BHMG1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388553
GTEX Portal (Tissue expression)BHMG1
Human Protein AtlasENSG00000237452-BHMG1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtC9JSJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtC9JSJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProC9JSJ3
Splice isoforms : SwissVarC9JSJ3
PhosPhoSitePlusC9JSJ3
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)    HMG_BOX_2 (PS50118)   
Domains : Interpro (EBI)bHLH_dom    HMG_box_dom   
Domain families : Pfam (Sanger)HLH (PF00010)    HMG_box (PF00505)   
Domain families : Pfam (NCBI)pfam00010    pfam00505   
Domain families : Smart (EMBL)HMG (SM00398)  
Conserved Domain (NCBI)BHMG1
DMDM Disease mutations388553
Blocks (Seattle)BHMG1
SuperfamilyC9JSJ3
Human Protein Atlas [tissue]ENSG00000237452-BHMG1 [tissue]
Peptide AtlasC9JSJ3
Protein Interaction databases
DIP (DOE-UCLA)C9JSJ3
IntAct (EBI)C9JSJ3
FunCoupENSG00000237452
BioGRIDBHMG1
STRING (EMBL)BHMG1
ZODIACBHMG1
Ontologies - Pathways
QuickGOC9JSJ3
Ontology : AmiGODNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein dimerization activity  
Ontology : EGO-EBIDNA binding  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  protein dimerization activity  
NDEx NetworkBHMG1
Atlas of Cancer Signalling NetworkBHMG1
Wikipedia pathwaysBHMG1
Orthology - Evolution
OrthoDB388553
GeneTree (enSembl)ENSG00000237452
Phylogenetic Trees/Animal Genes : TreeFamBHMG1
HOVERGENC9JSJ3
HOGENOMC9JSJ3
Homologs : HomoloGeneBHMG1
Homology/Alignments : Family Browser (UCSC)BHMG1
Gene fusions - Rearrangements
Tumor Fusion PortalBHMG1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBHMG1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BHMG1
dbVarBHMG1
ClinVarBHMG1
1000_GenomesBHMG1 
Exome Variant ServerBHMG1
ExAC (Exome Aggregation Consortium)ENSG00000237452
GNOMAD BrowserENSG00000237452
Genetic variants : HAPMAP388553
Genomic Variants (DGV)BHMG1 [DGVbeta]
DECIPHERBHMG1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBHMG1 
Mutations
ICGC Data PortalBHMG1 
TCGA Data PortalBHMG1 
Broad Tumor PortalBHMG1
OASIS PortalBHMG1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBHMG1
BioMutasearch BHMG1
DgiDB (Drug Gene Interaction Database)BHMG1
DoCM (Curated mutations)BHMG1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BHMG1 (select a term)
intoGenBHMG1
Cancer3DBHMG1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBHMG1
MedgenBHMG1
Genetic Testing Registry BHMG1
NextProtC9JSJ3 [Medical]
TSGene388553
GENETestsBHMG1
Target ValidationBHMG1
Huge Navigator BHMG1 [HugePedia]
snp3D : Map Gene to Disease388553
BioCentury BCIQBHMG1
ClinGenBHMG1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388553
Chemical/Pharm GKB GenePA166123665
Clinical trialBHMG1
Miscellaneous
canSAR (ICR)BHMG1 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBHMG1
EVEXBHMG1
GoPubMedBHMG1
iHOPBHMG1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:38:10 CET 2017

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