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BICC1 (BicC family RNA binding protein 1)

Identity

Alias (NCBI)BICC
CYSRD
HGNC (Hugo) BICC1
HGNC Previous namebicaudal C homolog 1 (Drosophila)
LocusID (NCBI) 80114
Atlas_Id 60755
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 58512872 and ends at 58831435 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICC1 (10q21.1) / ADIPOR1 (1q32.1)BICC1 (10q21.1) / BICC1 (10q21.1)BICC1 (10q21.1) / CISD1 (10q21.1)
BICC1 (10q21.1) / DPYSL4 (10q26.3)BICC1 (10q21.1) / SMTN (22q12.2)BICC1 (10q21.1) / STARD13 (13q13.1)
BICC1 (10q21.1) / UBE2D1 (10q21.1)FGFR2 (10q26.13) / BICC1 (10q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BICC1   19351
LRG (Locus Reference Genomic)LRG_853
Cards
Entrez_Gene (NCBI)BICC1    BicC family RNA binding protein 1
AliasesBICC; CYSRD
GeneCards (Weizmann)BICC1
Ensembl hg19 (Hinxton)ENSG00000122870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122870 [Gene_View]  ENSG00000122870 [Sequence]  chr10:58512872-58831435 [Contig_View]  BICC1 [Vega]
ICGC DataPortalENSG00000122870
TCGA cBioPortalBICC1
AceView (NCBI)BICC1
Genatlas (Paris)BICC1
SOURCE (Princeton)BICC1
Genetics Home Reference (NIH)BICC1
Genomic and cartography
GoldenPath hg38 (UCSC)BICC1  -     chr10:58512872-58831435 +  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICC1  -     10q21.1   [Description]    (hg19-Feb_2009)
GoldenPathBICC1 - 10q21.1 [CytoView hg19]  BICC1 - 10q21.1 [CytoView hg38]
ImmunoBaseENSG00000122870
Genome Data Viewer NCBIBICC1 [Mapview hg19]  
OMIM601331   614295   
Gene and transcription
Genbank (Entrez)AK026129 AK130049 AK225427 AK225429 AK307780
RefSeq transcript (Entrez)NM_001080512
Consensus coding sequences : CCDS (NCBI)BICC1
Gene ExpressionBICC1 [ NCBI-GEO ]   BICC1 [ EBI - ARRAY_EXPRESS ]   BICC1 [ SEEK ]   BICC1 [ MEM ]
Gene Expression Viewer (FireBrowse)BICC1 [ Firebrowse - Broad ]
GenevisibleExpression of BICC1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80114
GTEX Portal (Tissue expression)BICC1
Human Protein AtlasENSG00000122870-BICC1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H694   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H694  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H694
PhosPhoSitePlusQ9H694
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)BICC1_SAM_dom    KH_dom    KH_dom_type_1    KH_dom_type_1_sf    SAM    SAM/pointed_sf   
Domain families : Pfam (Sanger)KH_1 (PF00013)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00013    pfam00536   
Domain families : Smart (EMBL)KH (SM00322)  SAM (SM00454)  
Conserved Domain (NCBI)BICC1
PDB (RSDB)4RQM    4RQN    6GY4   
PDB Europe4RQM    4RQN    6GY4   
PDB (PDBSum)4RQM    4RQN    6GY4   
PDB (IMB)4RQM    4RQN    6GY4   
Structural Biology KnowledgeBase4RQM    4RQN    6GY4   
SCOP (Structural Classification of Proteins)4RQM    4RQN    6GY4   
CATH (Classification of proteins structures)4RQM    4RQN    6GY4   
SuperfamilyQ9H694
AlphaFold pdb e-kbQ9H694   
Human Protein Atlas [tissue]ENSG00000122870-BICC1 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9H694
IntAct (EBI)Q9H694
BioGRIDBICC1
STRING (EMBL)BICC1
ZODIACBICC1
Ontologies - Pathways
QuickGOQ9H694
Ontology : AmiGOkidney development  RNA binding  cytoplasm  determination of left/right symmetry  heart development  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIkidney development  RNA binding  cytoplasm  determination of left/right symmetry  heart development  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkBICC1
Atlas of Cancer Signalling NetworkBICC1
Wikipedia pathwaysBICC1
Orthology - Evolution
OrthoDB80114
GeneTree (enSembl)ENSG00000122870
Phylogenetic Trees/Animal Genes : TreeFamBICC1
Homologs : HomoloGeneBICC1
Homology/Alignments : Family Browser (UCSC)BICC1
Gene fusions - Rearrangements
Fusion : QuiverBICC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BICC1
dbVarBICC1
ClinVarBICC1
MonarchBICC1
1000_GenomesBICC1 
Exome Variant ServerBICC1
GNOMAD BrowserENSG00000122870
Varsome BrowserBICC1
ACMGBICC1 variants
VarityQ9H694
Genomic Variants (DGV)BICC1 [DGVbeta]
DECIPHERBICC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICC1 
Mutations
ICGC Data PortalBICC1 
TCGA Data PortalBICC1 
Broad Tumor PortalBICC1
OASIS PortalBICC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBICC1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBICC1
Mutations and Diseases : HGMDBICC1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBICC1
DgiDB (Drug Gene Interaction Database)BICC1
DoCM (Curated mutations)BICC1
CIViC (Clinical Interpretations of Variants in Cancer)BICC1
Cancer3DBICC1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601331    614295   
Orphanet
DisGeNETBICC1
MedgenBICC1
Genetic Testing Registry BICC1
NextProtQ9H694 [Medical]
GENETestsBICC1
Target ValidationBICC1
Huge Navigator BICC1 [HugePedia]
ClinGenBICC1
Clinical trials, drugs, therapy
MyCancerGenomeBICC1
Protein Interactions : CTDBICC1
Pharm GKB GenePA134878124
PharosQ9H694
Clinical trialBICC1
Miscellaneous
canSAR (ICR)BICC1
HarmonizomeBICC1
DataMed IndexBICC1
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBICC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:19 CEST 2021

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