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BICC1 (BicC family RNA binding protein 1)

Identity

Alias_namesbicaudal C homolog 1 (Drosophila)
Other aliasBICC
CYSRD
HGNC (Hugo) BICC1
LocusID (NCBI) 80114
Atlas_Id 60755
Location 10q21.1  [Link to chromosome band 10q21]
Location_base_pair Starts at 58513144 and ends at 58831437 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BICC1 (10q21.1) / ADIPOR1 (1q32.1)BICC1 (10q21.1) / BICC1 (10q21.1)BICC1 (10q21.1) / CISD1 (10q21.1)
BICC1 (10q21.1) / DPYSL4 (10q26.3)BICC1 (10q21.1) / SMTN (22q12.2)BICC1 (10q21.1) / STARD13 (13q13.1)
BICC1 (10q21.1) / UBE2D1 (10q21.1)FGFR2 (10q26.13) / BICC1 (10q21.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BICC1   19351
LRG (Locus Reference Genomic)LRG_853
Cards
Entrez_Gene (NCBI)BICC1  80114  BicC family RNA binding protein 1
AliasesBICC; CYSRD
GeneCards (Weizmann)BICC1
Ensembl hg19 (Hinxton)ENSG00000122870 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122870 [Gene_View]  chr10:58513144-58831437 [Contig_View]  BICC1 [Vega]
ICGC DataPortalENSG00000122870
TCGA cBioPortalBICC1
AceView (NCBI)BICC1
Genatlas (Paris)BICC1
WikiGenes80114
SOURCE (Princeton)BICC1
Genetics Home Reference (NIH)BICC1
Genomic and cartography
GoldenPath hg38 (UCSC)BICC1  -     chr10:58513144-58831437 +  10q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICC1  -     10q21.1   [Description]    (hg19-Feb_2009)
EnsemblBICC1 - 10q21.1 [CytoView hg19]  BICC1 - 10q21.1 [CytoView hg38]
Mapping of homologs : NCBIBICC1 [Mapview hg19]  BICC1 [Mapview hg38]
OMIM601331   614295   
Gene and transcription
Genbank (Entrez)AK026129 AK130049 AK225427 AK225429 AK307780
RefSeq transcript (Entrez)NM_001080512
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BICC1
Cluster EST : UnigeneHs.633222 [ NCBI ]
CGAP (NCI)Hs.633222
Alternative Splicing GalleryENSG00000122870
Gene ExpressionBICC1 [ NCBI-GEO ]   BICC1 [ EBI - ARRAY_EXPRESS ]   BICC1 [ SEEK ]   BICC1 [ MEM ]
Gene Expression Viewer (FireBrowse)BICC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80114
GTEX Portal (Tissue expression)BICC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H694   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H694  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H694
Splice isoforms : SwissVarQ9H694
PhosPhoSitePlusQ9H694
Domaine pattern : Prosite (Expaxy)KH_TYPE_1 (PS50084)    SAM_DOMAIN (PS50105)   
Domains : Interpro (EBI)KH_dom    KH_dom_type_1    SAM    SAM/pointed   
Domain families : Pfam (Sanger)KH_1 (PF00013)    SAM_1 (PF00536)   
Domain families : Pfam (NCBI)pfam00013    pfam00536   
Domain families : Smart (EMBL)KH (SM00322)  SAM (SM00454)  
Conserved Domain (NCBI)BICC1
DMDM Disease mutations80114
Blocks (Seattle)BICC1
PDB (SRS)4RQM    4RQN   
PDB (PDBSum)4RQM    4RQN   
PDB (IMB)4RQM    4RQN   
PDB (RSDB)4RQM    4RQN   
Structural Biology KnowledgeBase4RQM    4RQN   
SCOP (Structural Classification of Proteins)4RQM    4RQN   
CATH (Classification of proteins structures)4RQM    4RQN   
SuperfamilyQ9H694
Human Protein AtlasENSG00000122870
Peptide AtlasQ9H694
IPIIPI00645643   IPI00017921   IPI00979885   
Protein Interaction databases
DIP (DOE-UCLA)Q9H694
IntAct (EBI)Q9H694
FunCoupENSG00000122870
BioGRIDBICC1
STRING (EMBL)BICC1
ZODIACBICC1
Ontologies - Pathways
QuickGOQ9H694
Ontology : AmiGORNA binding  cytoplasm  determination of left/right symmetry  heart development  negative regulation of canonical Wnt signaling pathway  
Ontology : EGO-EBIRNA binding  cytoplasm  determination of left/right symmetry  heart development  negative regulation of canonical Wnt signaling pathway  
NDEx NetworkBICC1
Atlas of Cancer Signalling NetworkBICC1
Wikipedia pathwaysBICC1
Orthology - Evolution
OrthoDB80114
GeneTree (enSembl)ENSG00000122870
Phylogenetic Trees/Animal Genes : TreeFamBICC1
HOVERGENQ9H694
HOGENOMQ9H694
Homologs : HomoloGeneBICC1
Homology/Alignments : Family Browser (UCSC)BICC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BICC1
dbVarBICC1
ClinVarBICC1
1000_GenomesBICC1 
Exome Variant ServerBICC1
ExAC (Exome Aggregation Consortium)BICC1 (select the gene name)
Genetic variants : HAPMAP80114
Genomic Variants (DGV)BICC1 [DGVbeta]
DECIPHERBICC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICC1 
Mutations
ICGC Data PortalBICC1 
TCGA Data PortalBICC1 
Broad Tumor PortalBICC1
OASIS PortalBICC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBICC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBICC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
BioMutasearch BICC1
DgiDB (Drug Gene Interaction Database)BICC1
DoCM (Curated mutations)BICC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BICC1 (select a term)
intoGenBICC1
Cancer3DBICC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601331    614295   
Orphanet
MedgenBICC1
Genetic Testing Registry BICC1
NextProtQ9H694 [Medical]
TSGene80114
GENETestsBICC1
Target ValidationBICC1
Huge Navigator BICC1 [HugePedia]
snp3D : Map Gene to Disease80114
BioCentury BCIQBICC1
ClinGenBICC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80114
Chemical/Pharm GKB GenePA134878124
Clinical trialBICC1
Miscellaneous
canSAR (ICR)BICC1 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBICC1
EVEXBICC1
GoPubMedBICC1
iHOPBICC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:02:19 CEST 2017

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