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BICD1 (BICD cargo adaptor 1)

Identity

Alias (NCBI)BICD
bic-D 1
HGNC (Hugo) BICD1
HGNC Previous nameBicaudal D (Drosophila) homolog 1
 bicaudal D homolog 1 (Drosophila)
LocusID (NCBI) 636
Atlas_Id 54156
Location 12p11.21  [Link to chromosome band 12p11]
Location_base_pair Starts at 32106847 and ends at 32383633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BICD1 (12p11.21) / BICD1 (12p11.21)BICD1 (12p11.21) / CCDC91 (12p11.22)BICD1 (12p11.21) / CDK6 (7q21.2)
BICD1 (12p11.21) / COG5 (7q22.3)BICD1 (12p11.21) / ETFBKMT (12p11.21)BICD1 (12p11.21) / KMT2C (7q36.1)
BICD1 (12p11.21) / PPP1R13L (19q13.32)BICD1 (12p11.21) / SOX5 (12p12.1)BICD1 (12p11.21) / SPAST (2p22.3)
BICD1 (12p11.21) / ZNF438 (10p11.23)CDH17 (8q22.1) / BICD1 (12p11.21)BICD1 12p11.21 / CCDC91 12p11.22
BICD1 12p11.21 / CDK6 7q21.2BICD1 12p11.21 / SOX5 12p12.1BICD1 12p11.21 / ZNF438 10p11.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BICD1   1049
Cards
Entrez_Gene (NCBI)BICD1    BICD cargo adaptor 1
AliasesBICD; bic-D
GeneCards (Weizmann)BICD1
Ensembl hg19 (Hinxton)ENSG00000151746 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151746 [Gene_View]  ENSG00000151746 [Sequence]  chr12:32106847-32383633 [Contig_View]  BICD1 [Vega]
ICGC DataPortalENSG00000151746
TCGA cBioPortalBICD1
AceView (NCBI)BICD1
Genatlas (Paris)BICD1
SOURCE (Princeton)BICD1
Genetics Home Reference (NIH)BICD1
Genomic and cartography
GoldenPath hg38 (UCSC)BICD1  -     chr12:32106847-32383633 +  12p11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICD1  -     12p11.21   [Description]    (hg19-Feb_2009)
GoldenPathBICD1 - 12p11.21 [CytoView hg19]  BICD1 - 12p11.21 [CytoView hg38]
ImmunoBaseENSG00000151746
genome Data Viewer NCBIBICD1 [Mapview hg19]  
OMIM602204   
Gene and transcription
Genbank (Entrez)AA207154 AA249429 AK095648 AK290188 AK313430
RefSeq transcript (Entrez)NM_001003398 NM_001354186 NM_001354187 NM_001354188 NM_001354189 NM_001363603 NM_001714
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BICD1
Alternative Splicing GalleryENSG00000151746
Gene ExpressionBICD1 [ NCBI-GEO ]   BICD1 [ EBI - ARRAY_EXPRESS ]   BICD1 [ SEEK ]   BICD1 [ MEM ]
Gene Expression Viewer (FireBrowse)BICD1 [ Firebrowse - Broad ]
GenevisibleExpression of BICD1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)636
GTEX Portal (Tissue expression)BICD1
Human Protein AtlasENSG00000151746-BICD1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96G01   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96G01  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96G01
Splice isoforms : SwissVarQ96G01
PhosPhoSitePlusQ96G01
Domains : Interpro (EBI)BICD   
Domain families : Pfam (Sanger)BicD (PF09730)   
Domain families : Pfam (NCBI)pfam09730   
Conserved Domain (NCBI)BICD1
Blocks (Seattle)BICD1
SuperfamilyQ96G01
Human Protein Atlas [tissue]ENSG00000151746-BICD1 [tissue]
Peptide AtlasQ96G01
HPRD03730
IPIIPI00018368   IPI00062115   IPI00337563   IPI01022287   IPI01021970   IPI01022081   IPI00794021   
Protein Interaction databases
DIP (DOE-UCLA)Q96G01
IntAct (EBI)Q96G01
BioGRIDBICD1
STRING (EMBL)BICD1
ZODIACBICD1
Ontologies - Pathways
QuickGOQ96G01
Ontology : AmiGOstructural constituent of cytoskeleton  protein binding  Golgi apparatus  Golgi apparatus  Golgi apparatus  trans-Golgi network  centrosome  cytosol  cytosol  cytosol  cytoskeleton  cytoplasmic microtubule  RNA processing  cytoskeletal anchor activity  cytoskeletal anchor activity  intracellular mRNA localization  anatomical structure morphogenesis  membrane  viral process  protein kinase binding  small GTPase binding  cytoplasmic vesicle  proteinase activated receptor binding  protein localization to organelle  protein localization to organelle  stress granule assembly  dynactin binding  dynactin binding  dynactin binding  tubulin complex  dynein intermediate chain binding  dynein intermediate chain binding  positive regulation of receptor-mediated endocytosis  positive regulation of receptor-mediated endocytosis  perinuclear region of cytoplasm  perinuclear region of cytoplasm  regulation of microtubule cytoskeleton organization  regulation of microtubule cytoskeleton organization  dynein complex binding  dynein complex binding  minus-end-directed organelle transport along microtubule  microtubule anchoring at microtubule organizing center  microtubule anchoring at microtubule organizing center  secretory vesicle  negative regulation of phospholipase C activity  regulation of proteinase activated receptor activity  negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway  positive regulation of protein localization to centrosome  
Ontology : EGO-EBIstructural constituent of cytoskeleton  protein binding  Golgi apparatus  Golgi apparatus  Golgi apparatus  trans-Golgi network  centrosome  cytosol  cytosol  cytosol  cytoskeleton  cytoplasmic microtubule  RNA processing  cytoskeletal anchor activity  cytoskeletal anchor activity  intracellular mRNA localization  anatomical structure morphogenesis  membrane  viral process  protein kinase binding  small GTPase binding  cytoplasmic vesicle  proteinase activated receptor binding  protein localization to organelle  protein localization to organelle  stress granule assembly  dynactin binding  dynactin binding  dynactin binding  tubulin complex  dynein intermediate chain binding  dynein intermediate chain binding  positive regulation of receptor-mediated endocytosis  positive regulation of receptor-mediated endocytosis  perinuclear region of cytoplasm  perinuclear region of cytoplasm  regulation of microtubule cytoskeleton organization  regulation of microtubule cytoskeleton organization  dynein complex binding  dynein complex binding  minus-end-directed organelle transport along microtubule  microtubule anchoring at microtubule organizing center  microtubule anchoring at microtubule organizing center  secretory vesicle  negative regulation of phospholipase C activity  regulation of proteinase activated receptor activity  negative regulation of phospholipase C-activating G protein-coupled receptor signaling pathway  positive regulation of protein localization to centrosome  
NDEx NetworkBICD1
Atlas of Cancer Signalling NetworkBICD1
Wikipedia pathwaysBICD1
Orthology - Evolution
OrthoDB636
GeneTree (enSembl)ENSG00000151746
Phylogenetic Trees/Animal Genes : TreeFamBICD1
HOGENOMQ96G01
Homologs : HomoloGeneBICD1
Homology/Alignments : Family Browser (UCSC)BICD1
Gene fusions - Rearrangements
Fusion : MitelmanBICD1/CCDC91 [12p11.21/12p11.22]  
Fusion : MitelmanBICD1/CDK6 [12p11.21/7q21.2]  
Fusion : MitelmanBICD1/METTL20 [12p11.21/12p11.21]  
Fusion : MitelmanBICD1/SOX5 [12p11.21/12p12.1]  
Fusion : MitelmanBICD1/ZNF438 [12p11.21/10p11.23]  
Fusion PortalBICD1 12p11.21 CCDC91 12p11.22 PRAD
Fusion PortalBICD1 12p11.21 CDK6 7q21.2 LUAD
Fusion PortalBICD1 12p11.21 SOX5 12p12.1 LGG
Fusion PortalBICD1 12p11.21 ZNF438 10p11.23 LGG
Fusion : QuiverBICD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICD1 [hg38]
dbVarBICD1
ClinVarBICD1
MonarchBICD1
1000_GenomesBICD1 
Exome Variant ServerBICD1
GNOMAD BrowserENSG00000151746
Varsome BrowserBICD1
Genomic Variants (DGV)BICD1 [DGVbeta]
DECIPHERBICD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICD1 
Mutations
ICGC Data PortalBICD1 
TCGA Data PortalBICD1 
Broad Tumor PortalBICD1
OASIS PortalBICD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBICD1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBICD1
Mutations and Diseases : HGMDBICD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BICD1
DgiDB (Drug Gene Interaction Database)BICD1
DoCM (Curated mutations)BICD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BICD1 (select a term)
intoGenBICD1
Cancer3DBICD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602204   
Orphanet
DisGeNETBICD1
MedgenBICD1
Genetic Testing Registry BICD1
NextProtQ96G01 [Medical]
GENETestsBICD1
Target ValidationBICD1
Huge Navigator BICD1 [HugePedia]
ClinGenBICD1
Clinical trials, drugs, therapy
MyCancerGenomeBICD1
Protein Interactions : CTD
Pharm GKB GenePA25352
PharosQ96G01
Clinical trialBICD1
Miscellaneous
canSAR (ICR)BICD1 (select the gene name)
HarmonizomeBICD1
DataMed IndexBICD1
Probes
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBICD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 25 19:12:46 CET 2021
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