Atlas of Genetics and Cytogenetics in Oncology and Haematology

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BICDL1 (BICD family like cargo adaptor 1)

Identity

Alias_namesCCDC64
coiled-coil domain containing 64
Alias_symbol (synonym)FLJ26450
BICDR-1
Other aliasBICDR1
CCDC64A
H_267D11.1
HGNC (Hugo) BICDL1
LocusID (NCBI) 92558
Atlas_Id 78574
Location 12q24.23  [Link to chromosome band 12q24]
Location_base_pair Starts at 119989844 and ends at 120094495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)BICDL1   28095
Cards
Entrez_Gene (NCBI)BICDL1  92558  BICD family like cargo adaptor 1
AliasesBICDR-1; BICDR1; CCDC64; CCDC64A; 
H_267D11.1
GeneCards (Weizmann)BICDL1
Ensembl hg19 (Hinxton)ENSG00000135127 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135127 [Gene_View]  ENSG00000135127 [Sequence]  chr12:119989844-120094495 [Contig_View]  BICDL1 [Vega]
ICGC DataPortalENSG00000135127
TCGA cBioPortalBICDL1
AceView (NCBI)BICDL1
Genatlas (Paris)BICDL1
WikiGenes92558
SOURCE (Princeton)BICDL1
Genetics Home Reference (NIH)BICDL1
Genomic and cartography
GoldenPath hg38 (UCSC)BICDL1  -     chr12:119989844-120094495 +  12q24.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICDL1  -     12q24.23   [Description]    (hg19-Feb_2009)
GoldenPathBICDL1 - 12q24.23 [CytoView hg19]  BICDL1 - 12q24.23 [CytoView hg38]
ImmunoBaseENSG00000135127
Mapping of homologs : NCBIBICDL1 [Mapview hg19]  BICDL1 [Mapview hg38]
OMIM617002   
Gene and transcription
Genbank (Entrez)AK129960 AK297888 AK301580 U88834
RefSeq transcript (Entrez)NM_001367886 NM_207311
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BICDL1
Cluster EST : UnigeneHs.369763 [ NCBI ]
CGAP (NCI)Hs.369763
Alternative Splicing GalleryENSG00000135127
Gene ExpressionBICDL1 [ NCBI-GEO ]   BICDL1 [ EBI - ARRAY_EXPRESS ]   BICDL1 [ SEEK ]   BICDL1 [ MEM ]
Gene Expression Viewer (FireBrowse)BICDL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92558
GTEX Portal (Tissue expression)BICDL1
Human Protein AtlasENSG00000135127-BICDL1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZP65   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZP65  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZP65
Splice isoforms : SwissVarQ6ZP65
PhosPhoSitePlusQ6ZP65
Domains : Interpro (EBI)HAP1_N   
Domain families : Pfam (Sanger)HAP1_N (PF04849)   
Domain families : Pfam (NCBI)pfam04849   
Conserved Domain (NCBI)BICDL1
DMDM Disease mutations92558
Blocks (Seattle)BICDL1
SuperfamilyQ6ZP65
Human Protein Atlas [tissue]ENSG00000135127-BICDL1 [tissue]
Peptide AtlasQ6ZP65
HPRD14292
IPIIPI00873532   IPI00792219   IPI00418658   IPI01022507   IPI01023031   IPI01021100   IPI00973366   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZP65
IntAct (EBI)Q6ZP65
FunCoupENSG00000135127
BioGRIDBICDL1
STRING (EMBL)BICDL1
ZODIACBICDL1
Ontologies - Pathways
QuickGOQ6ZP65
Ontology : AmiGOcytoplasm  centrosome  Rab GTPase binding  Rab GTPase binding  neuron projection development  dynactin binding  vesicle transport along microtubule  Golgi to secretory granule transport  Golgi to secretory granule transport  
Ontology : EGO-EBIcytoplasm  centrosome  Rab GTPase binding  Rab GTPase binding  neuron projection development  dynactin binding  vesicle transport along microtubule  Golgi to secretory granule transport  Golgi to secretory granule transport  
NDEx NetworkBICDL1
Atlas of Cancer Signalling NetworkBICDL1
Wikipedia pathwaysBICDL1
Orthology - Evolution
OrthoDB92558
GeneTree (enSembl)ENSG00000135127
Phylogenetic Trees/Animal Genes : TreeFamBICDL1
HOGENOMQ6ZP65
Homologs : HomoloGeneBICDL1
Homology/Alignments : Family Browser (UCSC)BICDL1
Gene fusions - Rearrangements
Fusion : QuiverBICDL1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICDL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BICDL1
dbVarBICDL1
ClinVarBICDL1
1000_GenomesBICDL1 
Exome Variant ServerBICDL1
ExAC (Exome Aggregation Consortium)ENSG00000135127
GNOMAD BrowserENSG00000135127
Varsome BrowserBICDL1
Genetic variants : HAPMAP92558
Genomic Variants (DGV)BICDL1 [DGVbeta]
DECIPHERBICDL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICDL1 
Mutations
ICGC Data PortalBICDL1 
TCGA Data PortalBICDL1 
Broad Tumor PortalBICDL1
OASIS PortalBICDL1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBICDL1
BioMutasearch BICDL1
DgiDB (Drug Gene Interaction Database)BICDL1
DoCM (Curated mutations)BICDL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BICDL1 (select a term)
intoGenBICDL1
Cancer3DBICDL1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617002   
Orphanet
DisGeNETBICDL1
MedgenBICDL1
Genetic Testing Registry BICDL1
NextProtQ6ZP65 [Medical]
TSGene92558
GENETestsBICDL1
Target ValidationBICDL1
Huge Navigator BICDL1 [HugePedia]
snp3D : Map Gene to Disease92558
BioCentury BCIQBICDL1
ClinGenBICDL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92558
Chemical/Pharm GKB GenePA143485416
Clinical trialBICDL1
Miscellaneous
canSAR (ICR)BICDL1 (select the gene name)
DataMed IndexBICDL1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBICDL1
EVEXBICDL1
GoPubMedBICDL1
iHOPBICDL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 15:20:39 CEST 2019
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