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BICRA (BRD4 interacting chromatin remodeling complex associated protein)

Identity

Other aliasGLTSCR1
HGNC (Hugo) BICRA
LocusID (NCBI) 29998
Atlas_Id 56828
Location 19q13.33  [Link to chromosome band 19q13]
Location_base_pair Starts at 47608196 and ends at 47703277 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BICRA   4332
Cards
Entrez_Gene (NCBI)BICRA  29998  BRD4 interacting chromatin remodeling complex associated protein
AliasesGLTSCR1
GeneCards (Weizmann)BICRA
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr19:47608196-47703277 [Contig_View]  BICRA [Vega]
TCGA cBioPortalBICRA
AceView (NCBI)BICRA
Genatlas (Paris)BICRA
WikiGenes29998
SOURCE (Princeton)BICRA
Genetics Home Reference (NIH)BICRA
Genomic and cartography
GoldenPath hg38 (UCSC)BICRA  -     chr19:47608196-47703277 +  19q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICRA  -     19q13.33   [Description]    (hg19-Feb_2009)
EnsemblBICRA - 19q13.33 [CytoView hg19]  BICRA - 19q13.33 [CytoView hg38]
Mapping of homologs : NCBIBICRA [Mapview hg19]  BICRA [Mapview hg38]
OMIM605690   
Gene and transcription
Genbank (Entrez)AA961479 AA994408 AF182077 AK097153 BC032065
RefSeq transcript (Entrez)NM_015711
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BICRA
Cluster EST : UnigeneHs.97244 [ NCBI ]
CGAP (NCI)Hs.97244
Gene ExpressionBICRA [ NCBI-GEO ]   BICRA [ EBI - ARRAY_EXPRESS ]   BICRA [ SEEK ]   BICRA [ MEM ]
Gene Expression Viewer (FireBrowse)BICRA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)29998
GTEX Portal (Tissue expression)BICRA
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NZM4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NZM4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NZM4
Splice isoforms : SwissVarQ9NZM4
PhosPhoSitePlusQ9NZM4
Domains : Interpro (EBI)GSCR1_dom   
Domain families : Pfam (Sanger)GLTSCR1 (PF15249)   
Domain families : Pfam (NCBI)pfam15249   
Conserved Domain (NCBI)BICRA
DMDM Disease mutations29998
Blocks (Seattle)BICRA
SuperfamilyQ9NZM4
Peptide AtlasQ9NZM4
IPIIPI00024568   IPI00873498   
Protein Interaction databases
DIP (DOE-UCLA)Q9NZM4
IntAct (EBI)Q9NZM4
BioGRIDBICRA
STRING (EMBL)BICRA
ZODIACBICRA
Ontologies - Pathways
QuickGOQ9NZM4
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkBICRA
Atlas of Cancer Signalling NetworkBICRA
Wikipedia pathwaysBICRA
Orthology - Evolution
OrthoDB29998
Phylogenetic Trees/Animal Genes : TreeFamBICRA
HOVERGENQ9NZM4
HOGENOMQ9NZM4
Homologs : HomoloGeneBICRA
Homology/Alignments : Family Browser (UCSC)BICRA
Gene fusions - Rearrangements
Tumor Fusion PortalBICRA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICRA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BICRA
dbVarBICRA
ClinVarBICRA
1000_GenomesBICRA 
Exome Variant ServerBICRA
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP29998
Genomic Variants (DGV)BICRA [DGVbeta]
DECIPHERBICRA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICRA 
Mutations
ICGC Data PortalBICRA 
TCGA Data PortalBICRA 
Broad Tumor PortalBICRA
OASIS PortalBICRA [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBICRA
BioMutasearch BICRA
DgiDB (Drug Gene Interaction Database)BICRA
DoCM (Curated mutations)BICRA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BICRA (select a term)
intoGenBICRA
Cancer3DBICRA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605690   
Orphanet
DisGeNETBICRA
MedgenBICRA
Genetic Testing Registry BICRA
NextProtQ9NZM4 [Medical]
TSGene29998
GENETestsBICRA
Target ValidationBICRA
Huge Navigator BICRA [HugePedia]
snp3D : Map Gene to Disease29998
BioCentury BCIQBICRA
ClinGenBICRA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD29998
Chemical/Pharm GKB GenePA28735
Clinical trialBICRA
Miscellaneous
canSAR (ICR)BICRA (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBICRA
EVEXBICRA
GoPubMedBICRA
iHOPBICRA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:04:51 CET 2017

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