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BICRAL (BRD4 interacting chromatin remodeling complex associated protein like)

Identity

Alias_namesKIAA0240
GLTSCR1L
KIAA0240
GLTSCR1-like
GLTSCR1 like
Other alias
HGNC (Hugo) BICRAL
LocusID (NCBI) 23506
Atlas_Id 79104
Location 6p21.1  [Link to chromosome band 6p21]
Location_base_pair Starts at 42746958 and ends at 42868560 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BICRAL   21111
Cards
Entrez_Gene (NCBI)BICRAL  23506  BRD4 interacting chromatin remodeling complex associated protein like
AliasesGLTSCR1L; KIAA0240
GeneCards (Weizmann)BICRAL
Ensembl hg19 (Hinxton)ENSG00000112624 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000112624 [Gene_View]  ENSG00000112624 [Sequence]  chr6:42746958-42868560 [Contig_View]  BICRAL [Vega]
ICGC DataPortalENSG00000112624
TCGA cBioPortalBICRAL
AceView (NCBI)BICRAL
Genatlas (Paris)BICRAL
WikiGenes23506
SOURCE (Princeton)BICRAL
Genetics Home Reference (NIH)BICRAL
Genomic and cartography
GoldenPath hg38 (UCSC)BICRAL  -     chr6:42746958-42868560 +  6p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BICRAL  -     6p21.1   [Description]    (hg19-Feb_2009)
EnsemblBICRAL - 6p21.1 [CytoView hg19]  BICRAL - 6p21.1 [CytoView hg38]
Mapping of homologs : NCBIBICRAL [Mapview hg19]  BICRAL [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK091434 AK093526 AK128771 AK294706 AL833540
RefSeq transcript (Entrez)NM_001318819 NM_015349
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BICRAL
Cluster EST : UnigeneHs.713817 [ NCBI ]
CGAP (NCI)Hs.713817
Alternative Splicing GalleryENSG00000112624
Gene ExpressionBICRAL [ NCBI-GEO ]   BICRAL [ EBI - ARRAY_EXPRESS ]   BICRAL [ SEEK ]   BICRAL [ MEM ]
Gene Expression Viewer (FireBrowse)BICRAL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23506
GTEX Portal (Tissue expression)BICRAL
Human Protein AtlasENSG00000112624-BICRAL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6AI39   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6AI39  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6AI39
Splice isoforms : SwissVarQ6AI39
PhosPhoSitePlusQ6AI39
Domains : Interpro (EBI)GSCR1_dom   
Domain families : Pfam (Sanger)GLTSCR1 (PF15249)   
Domain families : Pfam (NCBI)pfam15249   
Conserved Domain (NCBI)BICRAL
DMDM Disease mutations23506
Blocks (Seattle)BICRAL
SuperfamilyQ6AI39
Human Protein Atlas [tissue]ENSG00000112624-BICRAL [tissue]
Peptide AtlasQ6AI39
IPIIPI00465008   IPI01013033   
Protein Interaction databases
DIP (DOE-UCLA)Q6AI39
IntAct (EBI)Q6AI39
FunCoupENSG00000112624
BioGRIDBICRAL
STRING (EMBL)BICRAL
ZODIACBICRAL
Ontologies - Pathways
QuickGOQ6AI39
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkBICRAL
Atlas of Cancer Signalling NetworkBICRAL
Wikipedia pathwaysBICRAL
Orthology - Evolution
OrthoDB23506
GeneTree (enSembl)ENSG00000112624
Phylogenetic Trees/Animal Genes : TreeFamBICRAL
HOVERGENQ6AI39
HOGENOMQ6AI39
Homologs : HomoloGeneBICRAL
Homology/Alignments : Family Browser (UCSC)BICRAL
Gene fusions - Rearrangements
Fusion : QuiverBICRAL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBICRAL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BICRAL
dbVarBICRAL
ClinVarBICRAL
1000_GenomesBICRAL 
Exome Variant ServerBICRAL
ExAC (Exome Aggregation Consortium)ENSG00000112624
GNOMAD BrowserENSG00000112624
Varsome BrowserBICRAL
Genetic variants : HAPMAP23506
Genomic Variants (DGV)BICRAL [DGVbeta]
DECIPHERBICRAL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBICRAL 
Mutations
ICGC Data PortalBICRAL 
TCGA Data PortalBICRAL 
Broad Tumor PortalBICRAL
OASIS PortalBICRAL [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBICRAL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BICRAL
DgiDB (Drug Gene Interaction Database)BICRAL
DoCM (Curated mutations)BICRAL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BICRAL (select a term)
intoGenBICRAL
Cancer3DBICRAL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBICRAL
MedgenBICRAL
Genetic Testing Registry BICRAL
NextProtQ6AI39 [Medical]
TSGene23506
GENETestsBICRAL
Target ValidationBICRAL
Huge Navigator BICRAL [HugePedia]
snp3D : Map Gene to Disease23506
BioCentury BCIQBICRAL
ClinGenBICRAL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23506
Chemical/Pharm GKB GenePA134964468
Clinical trialBICRAL
Miscellaneous
canSAR (ICR)BICRAL (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBICRAL
EVEXBICRAL
GoPubMedBICRAL
iHOPBICRAL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Jul 30 13:36:51 CEST 2018

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