Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BIVM (basic, immunoglobulin-like variable motif containing)

Identity

Alias_symbol (synonym)FLJ20159
Other alias-
HGNC (Hugo) BIVM
LocusID (NCBI) 54841
Atlas_Id 56313
Location 13q33.1  [Link to chromosome band 13q33]
Location_base_pair Starts at 102799049 and ends at 102841538 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BIVM   16034
Cards
Entrez_Gene (NCBI)BIVM  54841  basic, immunoglobulin-like variable motif containing
Aliases
GeneCards (Weizmann)BIVM
Ensembl hg19 (Hinxton)ENSG00000134897 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134897 [Gene_View]  chr13:102799049-102841538 [Contig_View]  BIVM [Vega]
ICGC DataPortalENSG00000134897
TCGA cBioPortalBIVM
AceView (NCBI)BIVM
Genatlas (Paris)BIVM
WikiGenes54841
SOURCE (Princeton)BIVM
Genetics Home Reference (NIH)BIVM
Genomic and cartography
GoldenPath hg38 (UCSC)BIVM  -     chr13:102799049-102841538 +  13q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BIVM  -     13q33.1   [Description]    (hg19-Feb_2009)
EnsemblBIVM - 13q33.1 [CytoView hg19]  BIVM - 13q33.1 [CytoView hg38]
Mapping of homologs : NCBIBIVM [Mapview hg19]  BIVM [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF147319 AF339783 AF339793 AF411385 AK000166
RefSeq transcript (Entrez)NM_001159596 NM_017693
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BIVM
Cluster EST : UnigeneHs.288809 [ NCBI ]
CGAP (NCI)Hs.288809
Alternative Splicing GalleryENSG00000134897
Gene ExpressionBIVM [ NCBI-GEO ]   BIVM [ EBI - ARRAY_EXPRESS ]   BIVM [ SEEK ]   BIVM [ MEM ]
Gene Expression Viewer (FireBrowse)BIVM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54841
GTEX Portal (Tissue expression)BIVM
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86UB2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86UB2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86UB2
Splice isoforms : SwissVarQ86UB2
PhosPhoSitePlusQ86UB2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BIVM
DMDM Disease mutations54841
Blocks (Seattle)BIVM
SuperfamilyQ86UB2
Human Protein AtlasENSG00000134897
Peptide AtlasQ86UB2
HPRD09827
IPIIPI00158804   IPI00889697   IPI00943313   
Protein Interaction databases
DIP (DOE-UCLA)Q86UB2
IntAct (EBI)Q86UB2
FunCoupENSG00000134897
BioGRIDBIVM
STRING (EMBL)BIVM
ZODIACBIVM
Ontologies - Pathways
QuickGOQ86UB2
Ontology : AmiGOextracellular space  nucleoplasm  cytoplasm  
Ontology : EGO-EBIextracellular space  nucleoplasm  cytoplasm  
NDEx NetworkBIVM
Atlas of Cancer Signalling NetworkBIVM
Wikipedia pathwaysBIVM
Orthology - Evolution
OrthoDB54841
GeneTree (enSembl)ENSG00000134897
Phylogenetic Trees/Animal Genes : TreeFamBIVM
HOVERGENQ86UB2
HOGENOMQ86UB2
Homologs : HomoloGeneBIVM
Homology/Alignments : Family Browser (UCSC)BIVM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBIVM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BIVM
dbVarBIVM
ClinVarBIVM
1000_GenomesBIVM 
Exome Variant ServerBIVM
ExAC (Exome Aggregation Consortium)BIVM (select the gene name)
Genetic variants : HAPMAP54841
Genomic Variants (DGV)BIVM [DGVbeta]
DECIPHERBIVM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBIVM 
Mutations
ICGC Data PortalBIVM 
TCGA Data PortalBIVM 
Broad Tumor PortalBIVM
OASIS PortalBIVM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBIVM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBIVM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BIVM
DgiDB (Drug Gene Interaction Database)BIVM
DoCM (Curated mutations)BIVM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BIVM (select a term)
intoGenBIVM
Cancer3DBIVM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBIVM
Genetic Testing Registry BIVM
NextProtQ86UB2 [Medical]
TSGene54841
GENETestsBIVM
Huge Navigator BIVM [HugePedia]
snp3D : Map Gene to Disease54841
BioCentury BCIQBIVM
ClinGenBIVM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54841
Chemical/Pharm GKB GenePA25366
Clinical trialBIVM
Miscellaneous
canSAR (ICR)BIVM (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBIVM
EVEXBIVM
GoPubMedBIVM
iHOPBIVM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:07:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.