Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BLACAT1 (bladder cancer associated transcript 1 (non-protein coding))

Identity

Alias_symbol (synonym)linc-UBC1
LINC00912
onco-lncRNA-30
Other alias
HGNC (Hugo) BLACAT1
LocusID (NCBI) 101669762
Atlas_Id 53346
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 205434886 and ends at 205456086 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BLACAT1   48597
Cards
Entrez_Gene (NCBI)BLACAT1  101669762  bladder cancer associated transcript 1 (non-protein coding)
AliasesLINC00912; linc-UBC1; onco-lncRNA-30
GeneCards (Weizmann)BLACAT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr1:205434886-205456086 [Contig_View]  BLACAT1 [Vega]
TCGA cBioPortalBLACAT1
AceView (NCBI)BLACAT1
Genatlas (Paris)BLACAT1
WikiGenes101669762
SOURCE (Princeton)BLACAT1
Genetics Home Reference (NIH)BLACAT1
Genomic and cartography
GoldenPath hg38 (UCSC)BLACAT1  -     chr1:205434886-205456086 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BLACAT1  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblBLACAT1 - 1q32.1 [CytoView hg19]  BLACAT1 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIBLACAT1 [Mapview hg19]  BLACAT1 [Mapview hg38]
OMIM615480   
Gene and transcription
Genbank (Entrez)AK022594 BX640973 DA234729 DA703157
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BLACAT1
Cluster EST : UnigeneHs.666219 [ NCBI ]
CGAP (NCI)Hs.666219
Gene ExpressionBLACAT1 [ NCBI-GEO ]   BLACAT1 [ EBI - ARRAY_EXPRESS ]   BLACAT1 [ SEEK ]   BLACAT1 [ MEM ]
Gene Expression Viewer (FireBrowse)BLACAT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101669762
GTEX Portal (Tissue expression)BLACAT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BLACAT1
DMDM Disease mutations101669762
Blocks (Seattle)BLACAT1
Protein Interaction databases
BioGRIDBLACAT1
STRING (EMBL)BLACAT1
ZODIACBLACAT1
Ontologies - Pathways
Huge Navigator BLACAT1 [HugePedia]
snp3D : Map Gene to Disease101669762
BioCentury BCIQBLACAT1
ClinGenBLACAT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101669762
Clinical trialBLACAT1
Miscellaneous
canSAR (ICR)BLACAT1 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBLACAT1
EVEXBLACAT1
GoPubMedBLACAT1
iHOPBLACAT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:04:52 CET 2017

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