Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BLID (BH3-like motif containing, cell death inducer)

Identity

Alias_symbol (synonym)BRCC2
Other alias
HGNC (Hugo) BLID
LocusID (NCBI) 414899
Atlas_Id 51627
Location 11q24.1  [Link to chromosome band 11q24]
Location_base_pair Starts at 122115354 and ends at 122116215 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BLID   33495
Cards
Entrez_Gene (NCBI)BLID  414899  BH3-like motif containing, cell death inducer
AliasesBRCC2
GeneCards (Weizmann)BLID
Ensembl hg19 (Hinxton)ENSG00000259571 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000259571 [Gene_View]  chr11:122115354-122116215 [Contig_View]  BLID [Vega]
ICGC DataPortalENSG00000259571
TCGA cBioPortalBLID
AceView (NCBI)BLID
Genatlas (Paris)BLID
WikiGenes414899
SOURCE (Princeton)BLID
Genetics Home Reference (NIH)BLID
Genomic and cartography
GoldenPath hg38 (UCSC)BLID  -     chr11:122115354-122116215 -  11q24.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BLID  -     11q24.1   [Description]    (hg19-Feb_2009)
EnsemblBLID - 11q24.1 [CytoView hg19]  BLID - 11q24.1 [CytoView hg38]
Mapping of homologs : NCBIBLID [Mapview hg19]  BLID [Mapview hg38]
OMIM608853   
Gene and transcription
Genbank (Entrez)AF303179 BC130361 BC130363 HQ258713
RefSeq transcript (Entrez)NM_001001786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BLID
Cluster EST : UnigeneHs.686109 [ NCBI ]
CGAP (NCI)Hs.686109
Alternative Splicing GalleryENSG00000259571
Gene ExpressionBLID [ NCBI-GEO ]   BLID [ EBI - ARRAY_EXPRESS ]   BLID [ SEEK ]   BLID [ MEM ]
Gene Expression Viewer (FireBrowse)BLID [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414899
GTEX Portal (Tissue expression)BLID
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IZY5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IZY5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IZY5
Splice isoforms : SwissVarQ8IZY5
PhosPhoSitePlusQ8IZY5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BLID
DMDM Disease mutations414899
Blocks (Seattle)BLID
SuperfamilyQ8IZY5
Human Protein AtlasENSG00000259571
Peptide AtlasQ8IZY5
HPRD16392
IPIIPI00218102   
Protein Interaction databases
DIP (DOE-UCLA)Q8IZY5
IntAct (EBI)Q8IZY5
FunCoupENSG00000259571
BioGRIDBLID
STRING (EMBL)BLID
ZODIACBLID
Ontologies - Pathways
QuickGOQ8IZY5
Ontology : AmiGOmitochondrion  apoptotic process  
Ontology : EGO-EBImitochondrion  apoptotic process  
NDEx NetworkBLID
Atlas of Cancer Signalling NetworkBLID
Wikipedia pathwaysBLID
Orthology - Evolution
OrthoDB414899
GeneTree (enSembl)ENSG00000259571
Phylogenetic Trees/Animal Genes : TreeFamBLID
HOVERGENQ8IZY5
HOGENOMQ8IZY5
Homologs : HomoloGeneBLID
Homology/Alignments : Family Browser (UCSC)BLID
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBLID [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BLID
dbVarBLID
ClinVarBLID
1000_GenomesBLID 
Exome Variant ServerBLID
ExAC (Exome Aggregation Consortium)BLID (select the gene name)
Genetic variants : HAPMAP414899
Genomic Variants (DGV)BLID [DGVbeta]
DECIPHERBLID [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBLID 
Mutations
ICGC Data PortalBLID 
TCGA Data PortalBLID 
Broad Tumor PortalBLID
OASIS PortalBLID [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBLID  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBLID
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BLID
DgiDB (Drug Gene Interaction Database)BLID
DoCM (Curated mutations)BLID (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BLID (select a term)
intoGenBLID
Cancer3DBLID(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608853   
Orphanet
MedgenBLID
Genetic Testing Registry BLID
NextProtQ8IZY5 [Medical]
TSGene414899
GENETestsBLID
Huge Navigator BLID [HugePedia]
snp3D : Map Gene to Disease414899
BioCentury BCIQBLID
ClinGenBLID
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414899
Chemical/Pharm GKB GenePA162377555
Clinical trialBLID
Miscellaneous
canSAR (ICR)BLID (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBLID
EVEXBLID
GoPubMedBLID
iHOPBLID
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:07:48 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.