Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BLVRA (biliverdin reductase A)

Identity

Alias_namesBLVR
Other aliasBVR
BVRA
HGNC (Hugo) BLVRA
LocusID (NCBI) 644
Atlas_Id 53690
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 43758673 and ends at 43807342 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
TMEM117 (12q12) / BLVRA (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BLVRA   1062
Cards
Entrez_Gene (NCBI)BLVRA  644  biliverdin reductase A
AliasesBLVR; BVR; BVRA
GeneCards (Weizmann)BLVRA
Ensembl hg19 (Hinxton)ENSG00000106605 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000106605 [Gene_View]  chr7:43758673-43807342 [Contig_View]  BLVRA [Vega]
ICGC DataPortalENSG00000106605
TCGA cBioPortalBLVRA
AceView (NCBI)BLVRA
Genatlas (Paris)BLVRA
WikiGenes644
SOURCE (Princeton)BLVRA
Genetics Home Reference (NIH)BLVRA
Genomic and cartography
GoldenPath hg38 (UCSC)BLVRA  -     chr7:43758673-43807342 +  7p13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BLVRA  -     7p13   [Description]    (hg19-Feb_2009)
EnsemblBLVRA - 7p13 [CytoView hg19]  BLVRA - 7p13 [CytoView hg38]
Mapping of homologs : NCBIBLVRA [Mapview hg19]  BLVRA [Mapview hg38]
OMIM109750   614156   
Gene and transcription
Genbank (Entrez)AK291862 BC005902 BC008456 BM710258 CA418616
RefSeq transcript (Entrez)NM_000712 NM_001253823
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BLVRA
Cluster EST : UnigeneHs.488143 [ NCBI ]
CGAP (NCI)Hs.488143
Alternative Splicing GalleryENSG00000106605
Gene ExpressionBLVRA [ NCBI-GEO ]   BLVRA [ EBI - ARRAY_EXPRESS ]   BLVRA [ SEEK ]   BLVRA [ MEM ]
Gene Expression Viewer (FireBrowse)BLVRA [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)644
GTEX Portal (Tissue expression)BLVRA
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53004   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53004  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53004
Splice isoforms : SwissVarP53004
Catalytic activity : Enzyme1.3.1.24 [ Enzyme-Expasy ]   1.3.1.241.3.1.24 [ IntEnz-EBI ]   1.3.1.24 [ BRENDA ]   1.3.1.24 [ KEGG ]   
PhosPhoSitePlusP53004
Domains : Interpro (EBI)Biliverdin_Rdtase_A    Biliverdin_Rdtase_cat    NAD(P)-bd_dom    Oxidoreductase_N   
Domain families : Pfam (Sanger)Biliv-reduc_cat (PF09166)    GFO_IDH_MocA (PF01408)   
Domain families : Pfam (NCBI)pfam09166    pfam01408   
Domain structure : Prodom (Prabi Lyon)Biliverdin_Rdtase_cat (PD040165)   
Conserved Domain (NCBI)BLVRA
DMDM Disease mutations644
Blocks (Seattle)BLVRA
PDB (SRS)2H63   
PDB (PDBSum)2H63   
PDB (IMB)2H63   
PDB (RSDB)2H63   
Structural Biology KnowledgeBase2H63   
SCOP (Structural Classification of Proteins)2H63   
CATH (Classification of proteins structures)2H63   
SuperfamilyP53004
Human Protein AtlasENSG00000106605
Peptide AtlasP53004
HPRD11229
IPIIPI00294158   IPI00926066   
Protein Interaction databases
DIP (DOE-UCLA)P53004
IntAct (EBI)P53004
FunCoupENSG00000106605
BioGRIDBLVRA
STRING (EMBL)BLVRA
ZODIACBLVRA
Ontologies - Pathways
QuickGOP53004
Ontology : AmiGObiliverdin reductase activity  biliverdin reductase activity  protein binding  cytosol  cytosol  zinc ion binding  heme catabolic process  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIbiliverdin reductase activity  biliverdin reductase activity  protein binding  cytosol  cytosol  zinc ion binding  heme catabolic process  oxidation-reduction process  extracellular exosome  
Pathways : BIOCARTAIL-10 Anti-inflammatory Signaling Pathway [Genes]   
Pathways : KEGGPorphyrin and chlorophyll metabolism   
NDEx NetworkBLVRA
Atlas of Cancer Signalling NetworkBLVRA
Wikipedia pathwaysBLVRA
Orthology - Evolution
OrthoDB644
GeneTree (enSembl)ENSG00000106605
Phylogenetic Trees/Animal Genes : TreeFamBLVRA
HOVERGENP53004
HOGENOMP53004
Homologs : HomoloGeneBLVRA
Homology/Alignments : Family Browser (UCSC)BLVRA
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBLVRA [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BLVRA
dbVarBLVRA
ClinVarBLVRA
1000_GenomesBLVRA 
Exome Variant ServerBLVRA
ExAC (Exome Aggregation Consortium)BLVRA (select the gene name)
Genetic variants : HAPMAP644
Genomic Variants (DGV)BLVRA [DGVbeta]
DECIPHERBLVRA [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBLVRA 
Mutations
ICGC Data PortalBLVRA 
TCGA Data PortalBLVRA 
Broad Tumor PortalBLVRA
OASIS PortalBLVRA [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBLVRA  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBLVRA
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BLVRA
DgiDB (Drug Gene Interaction Database)BLVRA
DoCM (Curated mutations)BLVRA (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BLVRA (select a term)
intoGenBLVRA
Cancer3DBLVRA(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM109750    614156   
Orphanet20373   
MedgenBLVRA
Genetic Testing Registry BLVRA
NextProtP53004 [Medical]
TSGene644
GENETestsBLVRA
Target ValidationBLVRA
Huge Navigator BLVRA [HugePedia]
snp3D : Map Gene to Disease644
BioCentury BCIQBLVRA
ClinGenBLVRA
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD644
Chemical/Pharm GKB GenePA25373
Clinical trialBLVRA
Miscellaneous
canSAR (ICR)BLVRA (select the gene name)
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBLVRA
EVEXBLVRA
GoPubMedBLVRA
iHOPBLVRA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:48:00 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.