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BLVRB (biliverdin reductase B)

Identity

Alias_namesFLR
Flavin reductase
biliverdin reductase B (flavin reductase (NADPH))
Alias_symbol (synonym)SDR43U1
Other aliasBVRB
HEL-S-10
HGNC (Hugo) BLVRB
LocusID (NCBI) 645
Atlas_Id 55876
Location 19q13.2  [Link to chromosome band 19q13]
Location_base_pair Starts at 40447784 and ends at 40465818 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
KIF18A (11p14.1) / BLVRB (19q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BLVRB   1063
Cards
Entrez_Gene (NCBI)BLVRB  645  biliverdin reductase B
AliasesBVRB; FLR; HEL-S-10; SDR43U1
GeneCards (Weizmann)BLVRB
Ensembl hg19 (Hinxton)ENSG00000090013 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000090013 [Gene_View]  chr19:40447784-40465818 [Contig_View]  BLVRB [Vega]
ICGC DataPortalENSG00000090013
TCGA cBioPortalBLVRB
AceView (NCBI)BLVRB
Genatlas (Paris)BLVRB
WikiGenes645
SOURCE (Princeton)BLVRB
Genetics Home Reference (NIH)BLVRB
Genomic and cartography
GoldenPath hg38 (UCSC)BLVRB  -     chr19:40447784-40465818 -  19q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BLVRB  -     19q13.2   [Description]    (hg19-Feb_2009)
EnsemblBLVRB - 19q13.2 [CytoView hg19]  BLVRB - 19q13.2 [CytoView hg38]
Mapping of homologs : NCBIBLVRB [Mapview hg19]  BLVRB [Mapview hg38]
OMIM600941   
Gene and transcription
Genbank (Entrez)AK312137 BC109371 BG340491 BU528444 D26308
RefSeq transcript (Entrez)NM_000713
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BLVRB
Cluster EST : UnigeneHs.515785 [ NCBI ]
CGAP (NCI)Hs.515785
Alternative Splicing GalleryENSG00000090013
Gene ExpressionBLVRB [ NCBI-GEO ]   BLVRB [ EBI - ARRAY_EXPRESS ]   BLVRB [ SEEK ]   BLVRB [ MEM ]
Gene Expression Viewer (FireBrowse)BLVRB [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645
GTEX Portal (Tissue expression)BLVRB
Protein : pattern, domain, 3D structure
UniProt/SwissProtP30043   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP30043  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP30043
Splice isoforms : SwissVarP30043
PhosPhoSitePlusP30043
Domains : Interpro (EBI)NAD(P)-bd_dom   
Domain families : Pfam (Sanger)NAD_binding_10 (PF13460)   
Domain families : Pfam (NCBI)pfam13460   
Conserved Domain (NCBI)BLVRB
DMDM Disease mutations645
Blocks (Seattle)BLVRB
PDB (SRS)1HDO    1HE2    1HE3    1HE4    1HE5   
PDB (PDBSum)1HDO    1HE2    1HE3    1HE4    1HE5   
PDB (IMB)1HDO    1HE2    1HE3    1HE4    1HE5   
PDB (RSDB)1HDO    1HE2    1HE3    1HE4    1HE5   
Structural Biology KnowledgeBase1HDO    1HE2    1HE3    1HE4    1HE5   
SCOP (Structural Classification of Proteins)1HDO    1HE2    1HE3    1HE4    1HE5   
CATH (Classification of proteins structures)1HDO    1HE2    1HE3    1HE4    1HE5   
SuperfamilyP30043
Human Protein AtlasENSG00000090013
Peptide AtlasP30043
HPRD02967
IPIIPI00783862   
Protein Interaction databases
DIP (DOE-UCLA)P30043
IntAct (EBI)P30043
FunCoupENSG00000090013
BioGRIDBLVRB
STRING (EMBL)BLVRB
ZODIACBLVRB
Ontologies - Pathways
QuickGOP30043
Ontology : AmiGObiliverdin reductase activity  biliverdin reductase activity  nucleoplasm  cytosol  cytosol  plasma membrane  heme catabolic process  heme catabolic process  riboflavin reductase (NADPH) activity  terminal bouton  oxidation-reduction process  extracellular exosome  
Ontology : EGO-EBIbiliverdin reductase activity  biliverdin reductase activity  nucleoplasm  cytosol  cytosol  plasma membrane  heme catabolic process  heme catabolic process  riboflavin reductase (NADPH) activity  terminal bouton  oxidation-reduction process  extracellular exosome  
Pathways : BIOCARTAIL-10 Anti-inflammatory Signaling Pathway [Genes]   
Pathways : KEGGRiboflavin metabolism    Porphyrin and chlorophyll metabolism   
NDEx NetworkBLVRB
Atlas of Cancer Signalling NetworkBLVRB
Wikipedia pathwaysBLVRB
Orthology - Evolution
OrthoDB645
GeneTree (enSembl)ENSG00000090013
Phylogenetic Trees/Animal Genes : TreeFamBLVRB
HOVERGENP30043
HOGENOMP30043
Homologs : HomoloGeneBLVRB
Homology/Alignments : Family Browser (UCSC)BLVRB
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBLVRB [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BLVRB
dbVarBLVRB
ClinVarBLVRB
1000_GenomesBLVRB 
Exome Variant ServerBLVRB
ExAC (Exome Aggregation Consortium)BLVRB (select the gene name)
Genetic variants : HAPMAP645
Genomic Variants (DGV)BLVRB [DGVbeta]
DECIPHERBLVRB [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBLVRB 
Mutations
ICGC Data PortalBLVRB 
TCGA Data PortalBLVRB 
Broad Tumor PortalBLVRB
OASIS PortalBLVRB [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBLVRB  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBLVRB
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BLVRB
DgiDB (Drug Gene Interaction Database)BLVRB
DoCM (Curated mutations)BLVRB (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BLVRB (select a term)
intoGenBLVRB
Cancer3DBLVRB(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600941   
Orphanet
MedgenBLVRB
Genetic Testing Registry BLVRB
NextProtP30043 [Medical]
TSGene645
GENETestsBLVRB
Target ValidationBLVRB
Huge Navigator BLVRB [HugePedia]
snp3D : Map Gene to Disease645
BioCentury BCIQBLVRB
ClinGenBLVRB
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645
Chemical/Pharm GKB GenePA25374
Clinical trialBLVRB
Miscellaneous
canSAR (ICR)BLVRB (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBLVRB
EVEXBLVRB
GoPubMedBLVRB
iHOPBLVRB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:59:20 CEST 2017

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