Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BMS1P20 (BMS1, ribosome biogenesis factor pseudogene 20)

Identity

Alias_namesBMS1 pseudogene 20
Other aliasIGL
IGLV
IGLV1
HGNC (Hugo) BMS1P20
LocusID (NCBI) 96610
Atlas_Id 60774
Location 22q11.22  [Link to chromosome band 22q11]
Location_base_pair Starts at 22322674 and ends at 22322968 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BMS1P20   49153
Cards
Entrez_Gene (NCBI)BMS1P20  96610  BMS1, ribosome biogenesis factor pseudogene 20
AliasesIGL; IGLV; IGLV1
GeneCards (Weizmann)BMS1P20
Ensembl hg19 (Hinxton)ENSG00000236850 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000236850 [Gene_View]  chr22:22322674-22322968 [Contig_View]  BMS1P20 [Vega]
ICGC DataPortalENSG00000236850
TCGA cBioPortalBMS1P20
AceView (NCBI)BMS1P20
Genatlas (Paris)BMS1P20
WikiGenes96610
SOURCE (Princeton)BMS1P20
Genetics Home Reference (NIH)BMS1P20
Genomic and cartography
GoldenPath hg38 (UCSC)BMS1P20  -     chr22:22322674-22322968 +  22q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BMS1P20  -     22q11.22   [Description]    (hg19-Feb_2009)
EnsemblBMS1P20 - 22q11.22 [CytoView hg19]  BMS1P20 - 22q11.22 [CytoView hg38]
Mapping of homologs : NCBIBMS1P20 [Mapview hg19]  BMS1P20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB063986 AB363340 AB363397 AB845401 AF103652
RefSeq transcript (Entrez)NM_080926
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BMS1P20
Cluster EST : UnigeneHs.654512 [ NCBI ]
CGAP (NCI)Hs.654512
Alternative Splicing GalleryENSG00000236850
Gene ExpressionBMS1P20 [ NCBI-GEO ]   BMS1P20 [ EBI - ARRAY_EXPRESS ]   BMS1P20 [ SEEK ]   BMS1P20 [ MEM ]
Gene Expression Viewer (FireBrowse)BMS1P20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)96610
GTEX Portal (Tissue expression)BMS1P20
Human Protein AtlasENSG00000236850-BMS1P20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BMS1P20
DMDM Disease mutations96610
Blocks (Seattle)BMS1P20
Human Protein Atlas [tissue]ENSG00000236850-BMS1P20 [tissue]
HPRD14302
Protein Interaction databases
FunCoupENSG00000236850
BioGRIDBMS1P20
STRING (EMBL)BMS1P20
ZODIACBMS1P20
Ontologies - Pathways
Huge Navigator BMS1P20 [HugePedia]
snp3D : Map Gene to Disease96610
BioCentury BCIQBMS1P20
ClinGenBMS1P20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD96610
Clinical trialBMS1P20
Miscellaneous
canSAR (ICR)BMS1P20 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBMS1P20
EVEXBMS1P20
GoPubMedBMS1P20
iHOPBMS1P20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:43:27 CET 2017

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