Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BMT2 (base methyltransferase of 25S rRNA 2 homolog)

Identity

Alias_namesC7orf60
chromosome 7 open reading frame 60
Alias_symbol (synonym)DKFZp762M126
FLJ31818
Other alias
HGNC (Hugo) BMT2
LocusID (NCBI) 154743
Atlas_Id 78558
Location 7q31.1  [Link to chromosome band 7q31]
Location_base_pair Starts at 112819147 and ends at 112939877 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BMT2   26475
Cards
Entrez_Gene (NCBI)BMT2  154743  base methyltransferase of 25S rRNA 2 homolog
AliasesC7orf60
GeneCards (Weizmann)BMT2
Ensembl hg19 (Hinxton)ENSG00000164603 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164603 [Gene_View]  chr7:112819147-112939877 [Contig_View]  BMT2 [Vega]
ICGC DataPortalENSG00000164603
TCGA cBioPortalBMT2
AceView (NCBI)BMT2
Genatlas (Paris)BMT2
WikiGenes154743
SOURCE (Princeton)BMT2
Genetics Home Reference (NIH)BMT2
Genomic and cartography
GoldenPath hg38 (UCSC)BMT2  -     chr7:112819147-112939877 -  7q31.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BMT2  -     7q31.1   [Description]    (hg19-Feb_2009)
EnsemblBMT2 - 7q31.1 [CytoView hg19]  BMT2 - 7q31.1 [CytoView hg38]
Mapping of homologs : NCBIBMT2 [Mapview hg19]  BMT2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF274937 AK056380 AK299901 AL834437 BC114615
RefSeq transcript (Entrez)NM_152556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BMT2
Cluster EST : UnigeneHs.489734 [ NCBI ]
CGAP (NCI)Hs.489734
Alternative Splicing GalleryENSG00000164603
Gene ExpressionBMT2 [ NCBI-GEO ]   BMT2 [ EBI - ARRAY_EXPRESS ]   BMT2 [ SEEK ]   BMT2 [ MEM ]
Gene Expression Viewer (FireBrowse)BMT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)154743
GTEX Portal (Tissue expression)BMT2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ1RMZ1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ1RMZ1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ1RMZ1
Splice isoforms : SwissVarQ1RMZ1
PhosPhoSitePlusQ1RMZ1
Domains : Interpro (EBI)Bmt2    SAM-dependent_MTases   
Domain families : Pfam (Sanger)Bmt2 (PF11968)   
Domain families : Pfam (NCBI)pfam11968   
Conserved Domain (NCBI)BMT2
DMDM Disease mutations154743
Blocks (Seattle)BMT2
SuperfamilyQ1RMZ1
Human Protein AtlasENSG00000164603
Peptide AtlasQ1RMZ1
HPRD08108
IPIIPI00647561   IPI00924729   
Protein Interaction databases
DIP (DOE-UCLA)Q1RMZ1
IntAct (EBI)Q1RMZ1
FunCoupENSG00000164603
BioGRIDBMT2
STRING (EMBL)BMT2
ZODIACBMT2
Ontologies - Pathways
QuickGOQ1RMZ1
Ontology : AmiGOnucleolus  rRNA (adenine) methyltransferase activity  rRNA methylation  
Ontology : EGO-EBInucleolus  rRNA (adenine) methyltransferase activity  rRNA methylation  
NDEx NetworkBMT2
Atlas of Cancer Signalling NetworkBMT2
Wikipedia pathwaysBMT2
Orthology - Evolution
OrthoDB154743
GeneTree (enSembl)ENSG00000164603
Phylogenetic Trees/Animal Genes : TreeFamBMT2
HOVERGENQ1RMZ1
HOGENOMQ1RMZ1
Homologs : HomoloGeneBMT2
Homology/Alignments : Family Browser (UCSC)BMT2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBMT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BMT2
dbVarBMT2
ClinVarBMT2
1000_GenomesBMT2 
Exome Variant ServerBMT2
ExAC (Exome Aggregation Consortium)BMT2 (select the gene name)
Genetic variants : HAPMAP154743
Genomic Variants (DGV)BMT2 [DGVbeta]
DECIPHERBMT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBMT2 
Mutations
ICGC Data PortalBMT2 
TCGA Data PortalBMT2 
Broad Tumor PortalBMT2
OASIS PortalBMT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBMT2
BioMutasearch BMT2
DgiDB (Drug Gene Interaction Database)BMT2
DoCM (Curated mutations)BMT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BMT2 (select a term)
intoGenBMT2
Cancer3DBMT2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBMT2
Genetic Testing Registry BMT2
NextProtQ1RMZ1 [Medical]
TSGene154743
GENETestsBMT2
Target ValidationBMT2
Huge Navigator BMT2 [HugePedia]
snp3D : Map Gene to Disease154743
BioCentury BCIQBMT2
ClinGenBMT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD154743
Chemical/Pharm GKB GenePA162380700
Clinical trialBMT2
Miscellaneous
canSAR (ICR)BMT2 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBMT2
EVEXBMT2
GoPubMedBMT2
iHOPBMT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:46 CEST 2017

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