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BNC1 (basonuclin 1)

Identity

Alias_namesBNC
basonuclin
Alias_symbol (synonym)HsT19447
Other aliasBSN1
HGNC (Hugo) BNC1
LocusID (NCBI) 646
Atlas_Id 56128
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 83255903 and ends at 83283457 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BNC1   1081
Cards
Entrez_Gene (NCBI)BNC1  646  basonuclin 1
AliasesBNC; BSN1; HsT19447
GeneCards (Weizmann)BNC1
Ensembl hg19 (Hinxton)ENSG00000169594 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169594 [Gene_View]  chr15:83255903-83283457 [Contig_View]  BNC1 [Vega]
ICGC DataPortalENSG00000169594
TCGA cBioPortalBNC1
AceView (NCBI)BNC1
Genatlas (Paris)BNC1
WikiGenes646
SOURCE (Princeton)BNC1
Genetics Home Reference (NIH)BNC1
Genomic and cartography
GoldenPath hg38 (UCSC)BNC1  -     chr15:83255903-83283457 -  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BNC1  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblBNC1 - 15q25.2 [CytoView hg19]  BNC1 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBIBNC1 [Mapview hg19]  BNC1 [Mapview hg38]
OMIM601930   
Gene and transcription
Genbank (Entrez)AI921950 AK302992 BC111598 CN260997 DB051299
RefSeq transcript (Entrez)NM_001301206 NM_001717
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BNC1
Cluster EST : UnigeneHs.459153 [ NCBI ]
CGAP (NCI)Hs.459153
Alternative Splicing GalleryENSG00000169594
Gene ExpressionBNC1 [ NCBI-GEO ]   BNC1 [ EBI - ARRAY_EXPRESS ]   BNC1 [ SEEK ]   BNC1 [ MEM ]
Gene Expression Viewer (FireBrowse)BNC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646
GTEX Portal (Tissue expression)BNC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ01954   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ01954  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ01954
Splice isoforms : SwissVarQ01954
PhosPhoSitePlusQ01954
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)BNC1
DMDM Disease mutations646
Blocks (Seattle)BNC1
SuperfamilyQ01954
Human Protein AtlasENSG00000169594
Peptide AtlasQ01954
HPRD11799
IPIIPI00304972   IPI01014840   
Protein Interaction databases
DIP (DOE-UCLA)Q01954
IntAct (EBI)Q01954
FunCoupENSG00000169594
BioGRIDBNC1
STRING (EMBL)BNC1
ZODIACBNC1
Ontologies - Pathways
QuickGOQ01954
Ontology : AmiGODNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  positive regulation of cell proliferation  epidermis development  cell differentiation  metal ion binding  
Ontology : EGO-EBIDNA binding  transcription factor activity, sequence-specific DNA binding  nucleus  nucleoplasm  cytoplasm  transcription, DNA-templated  regulation of transcription, DNA-templated  spermatogenesis  positive regulation of cell proliferation  epidermis development  cell differentiation  metal ion binding  
NDEx NetworkBNC1
Atlas of Cancer Signalling NetworkBNC1
Wikipedia pathwaysBNC1
Orthology - Evolution
OrthoDB646
GeneTree (enSembl)ENSG00000169594
Phylogenetic Trees/Animal Genes : TreeFamBNC1
HOVERGENQ01954
HOGENOMQ01954
Homologs : HomoloGeneBNC1
Homology/Alignments : Family Browser (UCSC)BNC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBNC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BNC1
dbVarBNC1
ClinVarBNC1
1000_GenomesBNC1 
Exome Variant ServerBNC1
ExAC (Exome Aggregation Consortium)BNC1 (select the gene name)
Genetic variants : HAPMAP646
Genomic Variants (DGV)BNC1 [DGVbeta]
DECIPHERBNC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBNC1 
Mutations
ICGC Data PortalBNC1 
TCGA Data PortalBNC1 
Broad Tumor PortalBNC1
OASIS PortalBNC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBNC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBNC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BNC1
DgiDB (Drug Gene Interaction Database)BNC1
DoCM (Curated mutations)BNC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BNC1 (select a term)
intoGenBNC1
Cancer3DBNC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601930   
Orphanet
MedgenBNC1
Genetic Testing Registry BNC1
NextProtQ01954 [Medical]
TSGene646
GENETestsBNC1
Target ValidationBNC1
Huge Navigator BNC1 [HugePedia]
snp3D : Map Gene to Disease646
BioCentury BCIQBNC1
ClinGenBNC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646
Chemical/Pharm GKB GenePA25391
Clinical trialBNC1
Miscellaneous
canSAR (ICR)BNC1 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBNC1
EVEXBNC1
GoPubMedBNC1
iHOPBNC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:56:11 CEST 2017

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