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BNC2 (basonuclin 2)

Identity

Alias_symbol (synonym)BSN2
FLJ20043
Other alias
HGNC (Hugo) BNC2
LocusID (NCBI) 54796
Atlas_Id 51224
Location 9p22.3  [Link to chromosome band 9p22]
Location_base_pair Starts at 16409503 and ends at 16870788 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BNC2 (9p22.3) / ARHGAP44 (17p12)BNC2 (9p22.3) / ATP7A (Xq21.1)BNC2 (9p22.3) / IGFBP5 (2q35)
BNC2 (9p22.3) / MTAP (9p21.3)CDC37L1 (9p24.1) / BNC2 (9p22.3)ESR1 (6q25.1) / BNC2 (9p22.3)
MTAP (9p21.3) / BNC2 (9p22.3)RIC1 (9p24.1) / BNC2 (9p22.3)CDC37L1 9p24.1 / BNC2 9p22.3
ESR1 6q25.1 / BNC2 9p22.3KIAA1432 BNC2 9p22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BNC2   30988
Cards
Entrez_Gene (NCBI)BNC2  54796  basonuclin 2
AliasesBSN2
GeneCards (Weizmann)BNC2
Ensembl hg19 (Hinxton)ENSG00000173068 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173068 [Gene_View]  chr9:16409503-16870788 [Contig_View]  BNC2 [Vega]
ICGC DataPortalENSG00000173068
TCGA cBioPortalBNC2
AceView (NCBI)BNC2
Genatlas (Paris)BNC2
WikiGenes54796
SOURCE (Princeton)BNC2
Genetics Home Reference (NIH)BNC2
Genomic and cartography
GoldenPath hg38 (UCSC)BNC2  -     chr9:16409503-16870788 -  9p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BNC2  -     9p22.3   [Description]    (hg19-Feb_2009)
EnsemblBNC2 - 9p22.3 [CytoView hg19]  BNC2 - 9p22.3 [CytoView hg38]
Mapping of homologs : NCBIBNC2 [Mapview hg19]  BNC2 [Mapview hg38]
OMIM608669   
Gene and transcription
Genbank (Entrez)###############################################################################################################################################################################################################################################################
RefSeq transcript (Entrez)NM_001317939 NM_001317940 NM_017637
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BNC2
Cluster EST : UnigeneHs.740070 [ NCBI ]
CGAP (NCI)Hs.740070
Alternative Splicing GalleryENSG00000173068
Gene ExpressionBNC2 [ NCBI-GEO ]   BNC2 [ EBI - ARRAY_EXPRESS ]   BNC2 [ SEEK ]   BNC2 [ MEM ]
Gene Expression Viewer (FireBrowse)BNC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54796
GTEX Portal (Tissue expression)BNC2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZN30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZN30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZN30
Splice isoforms : SwissVarQ6ZN30
PhosPhoSitePlusQ6ZN30
Domaine pattern : Prosite (Expaxy)ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (EBI)Znf_C2H2    Znf_C2H2-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ZnF_C2H2 (SM00355)  
Conserved Domain (NCBI)BNC2
DMDM Disease mutations54796
Blocks (Seattle)BNC2
SuperfamilyQ6ZN30
Human Protein AtlasENSG00000173068
Peptide AtlasQ6ZN30
HPRD12274
IPIIPI00465099   IPI00014826   IPI00978025   IPI01010395   IPI00984902   IPI00816699   IPI01018937   IPI00657705   IPI00796923   IPI00815830   IPI00816454   IPI00657659   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZN30
IntAct (EBI)Q6ZN30
FunCoupENSG00000173068
BioGRIDBNC2
STRING (EMBL)BNC2
ZODIACBNC2
Ontologies - Pathways
QuickGOQ6ZN30
Ontology : AmiGOendochondral bone growth  DNA binding  nucleus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  tongue development  metal ion binding  palate development  mesenchyme development  
Ontology : EGO-EBIendochondral bone growth  DNA binding  nucleus  cytosol  plasma membrane  transcription, DNA-templated  regulation of transcription, DNA-templated  tongue development  metal ion binding  palate development  mesenchyme development  
NDEx NetworkBNC2
Atlas of Cancer Signalling NetworkBNC2
Wikipedia pathwaysBNC2
Orthology - Evolution
OrthoDB54796
GeneTree (enSembl)ENSG00000173068
Phylogenetic Trees/Animal Genes : TreeFamBNC2
HOVERGENQ6ZN30
HOGENOMQ6ZN30
Homologs : HomoloGeneBNC2
Homology/Alignments : Family Browser (UCSC)BNC2
Gene fusions - Rearrangements
Fusion : MitelmanCDC37L1/BNC2 [9p24.1/9p22.3]  [t(9;9)(p22;p24)]  
Fusion : MitelmanESR1/BNC2 [6q25.1/9p22.3]  [t(6;9)(q25;p22)]  
Fusion : MitelmanRIC1/BNC2 [9p24.1/9p22.3]  [t(9;9)(p22;p24)]  
Fusion: TCGACDC37L1 9p24.1 BNC2 9p22.3 SKCM
Fusion: TCGAESR1 6q25.1 BNC2 9p22.3 BRCA
Fusion: TCGAKIAA1432 BNC2 9p22.3 HNSC
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBNC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BNC2
dbVarBNC2
ClinVarBNC2
1000_GenomesBNC2 
Exome Variant ServerBNC2
ExAC (Exome Aggregation Consortium)BNC2 (select the gene name)
Genetic variants : HAPMAP54796
Genomic Variants (DGV)BNC2 [DGVbeta]
DECIPHERBNC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBNC2 
Mutations
ICGC Data PortalBNC2 
TCGA Data PortalBNC2 
Broad Tumor PortalBNC2
OASIS PortalBNC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBNC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBNC2
intOGen PortalBNC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BNC2
DgiDB (Drug Gene Interaction Database)BNC2
DoCM (Curated mutations)BNC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BNC2 (select a term)
intoGenBNC2
Cancer3DBNC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608669   
Orphanet
MedgenBNC2
Genetic Testing Registry BNC2
NextProtQ6ZN30 [Medical]
TSGene54796
GENETestsBNC2
Target ValidationBNC2
Huge Navigator BNC2 [HugePedia]
snp3D : Map Gene to Disease54796
BioCentury BCIQBNC2
ClinGenBNC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54796
Chemical/Pharm GKB GenePA134953132
Clinical trialBNC2
Miscellaneous
canSAR (ICR)BNC2 (select the gene name)
Probes
Litterature
PubMed33 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBNC2
EVEXBNC2
GoPubMedBNC2
iHOPBNC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:56:11 CEST 2017

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