Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BNIP1 (BCL2 interacting protein 1)

Identity

Alias (NCBI)NIP1
SEC20
TRG-8
HGNC (Hugo) BNIP1
HGNC Alias symbNip1
SEC20
HGNC Previous nameBCL2/adenovirus E1B 19kDa interacting protein 1
LocusID (NCBI) 662
Atlas_Id 820
Location 5q35.1  [Link to chromosome band 5q35]
Location_base_pair Starts at 173144531 and ends at 173164387 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
LNX2 (13q12.2) / BNIP1 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(5;14)(q35;q11) TRD/NKX2-5


External links

Nomenclature
HGNC (Hugo)BNIP1   1082
Cards
Entrez_Gene (NCBI)BNIP1    BCL2 interacting protein 1
AliasesNIP1; SEC20; TRG-8
GeneCards (Weizmann)BNIP1
Ensembl hg19 (Hinxton)ENSG00000113734 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113734 [Gene_View]  ENSG00000113734 [Sequence]  chr5:173144531-173164387 [Contig_View]  BNIP1 [Vega]
ICGC DataPortalENSG00000113734
TCGA cBioPortalBNIP1
AceView (NCBI)BNIP1
Genatlas (Paris)BNIP1
SOURCE (Princeton)BNIP1
Genetics Home Reference (NIH)BNIP1
Genomic and cartography
GoldenPath hg38 (UCSC)BNIP1  -     chr5:173144531-173164387 +  5q35.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BNIP1  -     5q35.1   [Description]    (hg19-Feb_2009)
GoldenPathBNIP1 - 5q35.1 [CytoView hg19]  BNIP1 - 5q35.1 [CytoView hg38]
ImmunoBaseENSG00000113734
Genome Data Viewer NCBIBNIP1 [Mapview hg19]  
OMIM603291   
Gene and transcription
Genbank (Entrez)AF083956 AF083957 AF083958 AU311051 AY216799
RefSeq transcript (Entrez)NM_001205 NM_013978 NM_013979 NM_013980
Consensus coding sequences : CCDS (NCBI)BNIP1
Gene ExpressionBNIP1 [ NCBI-GEO ]   BNIP1 [ EBI - ARRAY_EXPRESS ]   BNIP1 [ SEEK ]   BNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)BNIP1 [ Firebrowse - Broad ]
GenevisibleExpression of BNIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)662
GTEX Portal (Tissue expression)BNIP1
Human Protein AtlasENSG00000113734-BNIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BNIP1
Human Protein Atlas [tissue]ENSG00000113734-BNIP1 [tissue]
HPRD04480
Protein Interaction databases
BioGRIDBNIP1
STRING (EMBL)BNIP1
ZODIACBNIP1
Ontologies - Pathways
Litterature
PubMed35 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:01:20 CEST 2021

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