Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BNIPL (BCL2 interacting protein like)

Identity

Alias_namesBCL2/adenovirus E1B 19kD interacting protein like
Alias_symbol (synonym)BNIPl-1
BNIPL-2
PP753
BNIP-S
BNIP-Salpha
BNIP-Sbeta
Other aliasBNIPL-1
BNIPL1
BNIPL2
BNIPS
HGNC (Hugo) BNIPL
LocusID (NCBI) 149428
Atlas_Id 43170
Location 1q21.3  [Link to chromosome band 1q21]
Location_base_pair Starts at 151036553 and ends at 151047600 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GABPB2 (1q21.3) / BNIPL (1q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  GABPB2/BNIPL (1q21)


External links

Nomenclature
HGNC (Hugo)BNIPL   16976
Cards
Entrez_Gene (NCBI)BNIPL  149428  BCL2 interacting protein like
AliasesBNIP-S; BNIP-Salpha; BNIP-Sbeta; BNIPL-1; 
BNIPL-2; BNIPL1; BNIPL2; BNIPS; PP753
GeneCards (Weizmann)BNIPL
Ensembl hg19 (Hinxton)ENSG00000163141 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163141 [Gene_View]  ENSG00000163141 [Sequence]  chr1:151036553-151047600 [Contig_View]  BNIPL [Vega]
ICGC DataPortalENSG00000163141
TCGA cBioPortalBNIPL
AceView (NCBI)BNIPL
Genatlas (Paris)BNIPL
WikiGenes149428
SOURCE (Princeton)BNIPL
Genetics Home Reference (NIH)BNIPL
Genomic and cartography
GoldenPath hg38 (UCSC)BNIPL  -     chr1:151036553-151047600 +  1q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BNIPL  -     1q21.3   [Description]    (hg19-Feb_2009)
EnsemblBNIPL - 1q21.3 [CytoView hg19]  BNIPL - 1q21.3 [CytoView hg38]
Mapping of homologs : NCBIBNIPL [Mapview hg19]  BNIPL [Mapview hg38]
OMIM611275   
Gene and transcription
Genbank (Entrez)AF193056 AK092595 AY033000 AY078983 AY078984
RefSeq transcript (Entrez)NM_001159642 NM_138278 NM_138279
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BNIPL
Cluster EST : UnigeneHs.591473 [ NCBI ]
CGAP (NCI)Hs.591473
Alternative Splicing GalleryENSG00000163141
Gene ExpressionBNIPL [ NCBI-GEO ]   BNIPL [ EBI - ARRAY_EXPRESS ]   BNIPL [ SEEK ]   BNIPL [ MEM ]
Gene Expression Viewer (FireBrowse)BNIPL [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)149428
GTEX Portal (Tissue expression)BNIPL
Human Protein AtlasENSG00000163141-BNIPL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z465   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z465  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z465
Splice isoforms : SwissVarQ7Z465
PhosPhoSitePlusQ7Z465
Domaine pattern : Prosite (Expaxy)CRAL_TRIO (PS50191)   
Domains : Interpro (EBI)Bcl2-/adenovirus-E1B    CRAL-TRIO_dom    CRAL-TRIO_dom_sf   
Domain families : Pfam (Sanger)BNIP2 (PF12496)    CRAL_TRIO_2 (PF13716)   
Domain families : Pfam (NCBI)pfam12496    pfam13716   
Domain families : Smart (EMBL)SEC14 (SM00516)  
Conserved Domain (NCBI)BNIPL
DMDM Disease mutations149428
Blocks (Seattle)BNIPL
SuperfamilyQ7Z465
Human Protein Atlas [tissue]ENSG00000163141-BNIPL [tissue]
Peptide AtlasQ7Z465
HPRD16557
IPIIPI00412103   IPI00513690   IPI00107433   IPI01015750   IPI00853582   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z465
IntAct (EBI)Q7Z465
FunCoupENSG00000163141
BioGRIDBNIPL
STRING (EMBL)BNIPL
ZODIACBNIPL
Ontologies - Pathways
QuickGOQ7Z465
Ontology : AmiGOexopolyphosphatase activity  protein binding  nucleus  cytoplasm  cytosol  polyphosphate catabolic process  apoptotic process  apoptotic process  negative regulation of cell proliferation  regulation of growth rate  identical protein binding  
Ontology : EGO-EBIexopolyphosphatase activity  protein binding  nucleus  cytoplasm  cytosol  polyphosphate catabolic process  apoptotic process  apoptotic process  negative regulation of cell proliferation  regulation of growth rate  identical protein binding  
NDEx NetworkBNIPL
Atlas of Cancer Signalling NetworkBNIPL
Wikipedia pathwaysBNIPL
Orthology - Evolution
OrthoDB149428
GeneTree (enSembl)ENSG00000163141
Phylogenetic Trees/Animal Genes : TreeFamBNIPL
HOVERGENQ7Z465
HOGENOMQ7Z465
Homologs : HomoloGeneBNIPL
Homology/Alignments : Family Browser (UCSC)BNIPL
Gene fusions - Rearrangements
Fusion : MitelmanGABPB2/BNIPL [1q21.3/1q21.3]  [t(1;1)(q21;q21)]  
Fusion : QuiverBNIPL
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBNIPL [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BNIPL
dbVarBNIPL
ClinVarBNIPL
1000_GenomesBNIPL 
Exome Variant ServerBNIPL
ExAC (Exome Aggregation Consortium)ENSG00000163141
GNOMAD BrowserENSG00000163141
Varsome BrowserBNIPL
Genetic variants : HAPMAP149428
Genomic Variants (DGV)BNIPL [DGVbeta]
DECIPHERBNIPL [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBNIPL 
Mutations
ICGC Data PortalBNIPL 
TCGA Data PortalBNIPL 
Broad Tumor PortalBNIPL
OASIS PortalBNIPL [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBNIPL  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBNIPL
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BNIPL
DgiDB (Drug Gene Interaction Database)BNIPL
DoCM (Curated mutations)BNIPL (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BNIPL (select a term)
intoGenBNIPL
Cancer3DBNIPL(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611275   
Orphanet
DisGeNETBNIPL
MedgenBNIPL
Genetic Testing Registry BNIPL
NextProtQ7Z465 [Medical]
TSGene149428
GENETestsBNIPL
Target ValidationBNIPL
Huge Navigator BNIPL [HugePedia]
snp3D : Map Gene to Disease149428
BioCentury BCIQBNIPL
ClinGenBNIPL
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD149428
Chemical/Pharm GKB GenePA38196
Clinical trialBNIPL
Miscellaneous
canSAR (ICR)BNIPL (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBNIPL
EVEXBNIPL
GoPubMedBNIPL
iHOPBNIPL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:11:45 CEST 2018

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