Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BOC (BOC cell adhesion associated, oncogene regulated)

Identity

Alias_namesBoc homolog (mouse)
Alias_symbol (synonym)CDON2
Other alias
HGNC (Hugo) BOC
LocusID (NCBI) 91653
Atlas_Id 51684
Location 3q13.2  [Link to chromosome band 3q13]
Location_base_pair Starts at 113212497 and ends at 113287463 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BOC (3q13.2) / ACTR1A (10q24.32)BOC (3q13.2) / BOC (3q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOC   17173
Cards
Entrez_Gene (NCBI)BOC  91653  BOC cell adhesion associated, oncogene regulated
AliasesCDON2
GeneCards (Weizmann)BOC
Ensembl hg19 (Hinxton)ENSG00000144857 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000144857 [Gene_View]  chr3:113212497-113287463 [Contig_View]  BOC [Vega]
ICGC DataPortalENSG00000144857
TCGA cBioPortalBOC
AceView (NCBI)BOC
Genatlas (Paris)BOC
WikiGenes91653
SOURCE (Princeton)BOC
Genetics Home Reference (NIH)BOC
Genomic and cartography
GoldenPath hg38 (UCSC)BOC  -     chr3:113212497-113287463 +  3q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BOC  -     3q13.2   [Description]    (hg19-Feb_2009)
EnsemblBOC - 3q13.2 [CytoView hg19]  BOC - 3q13.2 [CytoView hg38]
Mapping of homologs : NCBIBOC [Mapview hg19]  BOC [Mapview hg38]
OMIM608708   
Gene and transcription
Genbank (Entrez)AA716090 AK056359 AK074556 AK090455 AK309055
RefSeq transcript (Entrez)NM_001301861 NM_001301867 NM_033254
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BOC
Cluster EST : UnigeneHs.591318 [ NCBI ]
CGAP (NCI)Hs.591318
Alternative Splicing GalleryENSG00000144857
Gene ExpressionBOC [ NCBI-GEO ]   BOC [ EBI - ARRAY_EXPRESS ]   BOC [ SEEK ]   BOC [ MEM ]
Gene Expression Viewer (FireBrowse)BOC [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91653
GTEX Portal (Tissue expression)BOC
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BWV1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BWV1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BWV1
Splice isoforms : SwissVarQ9BWV1
PhosPhoSitePlusQ9BWV1
Domaine pattern : Prosite (Expaxy)FN3 (PS50853)    IG_LIKE (PS50835)   
Domains : Interpro (EBI)BOC    FN3_dom    Ig-like_dom    Ig-like_fold    Ig_I-set    Ig_sub    Ig_sub2    Immunoglobulin   
Domain families : Pfam (Sanger)fn3 (PF00041)    I-set (PF07679)    ig (PF00047)   
Domain families : Pfam (NCBI)pfam00041    pfam07679    pfam00047   
Domain families : Smart (EMBL)FN3 (SM00060)  IG (SM00409)  IGc2 (SM00408)  
Conserved Domain (NCBI)BOC
DMDM Disease mutations91653
Blocks (Seattle)BOC
PDB (SRS)3N1G    3N1M    3N1P   
PDB (PDBSum)3N1G    3N1M    3N1P   
PDB (IMB)3N1G    3N1M    3N1P   
PDB (RSDB)3N1G    3N1M    3N1P   
Structural Biology KnowledgeBase3N1G    3N1M    3N1P   
SCOP (Structural Classification of Proteins)3N1G    3N1M    3N1P   
CATH (Classification of proteins structures)3N1G    3N1M    3N1P   
SuperfamilyQ9BWV1
Human Protein AtlasENSG00000144857
Peptide AtlasQ9BWV1
IPIIPI00747930   IPI00744645   IPI00465322   IPI00061011   IPI00795735   IPI00945208   IPI00953283   IPI00946562   IPI00945706   IPI00945030   
Protein Interaction databases
DIP (DOE-UCLA)Q9BWV1
IntAct (EBI)Q9BWV1
FunCoupENSG00000144857
BioGRIDBOC
STRING (EMBL)BOC
ZODIACBOC
Ontologies - Pathways
QuickGOQ9BWV1
Ontology : AmiGOprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  smoothened signaling pathway  axon guidance  axonal growth cone  positive regulation of myoblast differentiation  positive regulation of muscle cell differentiation  
Ontology : EGO-EBIprotein binding  plasma membrane  integral component of plasma membrane  cell adhesion  smoothened signaling pathway  axon guidance  axonal growth cone  positive regulation of myoblast differentiation  positive regulation of muscle cell differentiation  
NDEx NetworkBOC
Atlas of Cancer Signalling NetworkBOC
Wikipedia pathwaysBOC
Orthology - Evolution
OrthoDB91653
GeneTree (enSembl)ENSG00000144857
Phylogenetic Trees/Animal Genes : TreeFamBOC
HOVERGENQ9BWV1
HOGENOMQ9BWV1
Homologs : HomoloGeneBOC
Homology/Alignments : Family Browser (UCSC)BOC
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOC [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOC
dbVarBOC
ClinVarBOC
1000_GenomesBOC 
Exome Variant ServerBOC
ExAC (Exome Aggregation Consortium)BOC (select the gene name)
Genetic variants : HAPMAP91653
Genomic Variants (DGV)BOC [DGVbeta]
DECIPHERBOC [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBOC 
Mutations
ICGC Data PortalBOC 
TCGA Data PortalBOC 
Broad Tumor PortalBOC
OASIS PortalBOC [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBOC  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBOC
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BOC
DgiDB (Drug Gene Interaction Database)BOC
DoCM (Curated mutations)BOC (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOC (select a term)
intoGenBOC
Cancer3DBOC(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608708   
Orphanet
MedgenBOC
Genetic Testing Registry BOC
NextProtQ9BWV1 [Medical]
TSGene91653
GENETestsBOC
Target ValidationBOC
Huge Navigator BOC [HugePedia]
snp3D : Map Gene to Disease91653
BioCentury BCIQBOC
ClinGenBOC
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91653
Chemical/Pharm GKB GenePA143485316
Clinical trialBOC
Miscellaneous
canSAR (ICR)BOC (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOC
EVEXBOC
GoPubMedBOC
iHOPBOC
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:48:04 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.