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BOD1 (biorientation of chromosomes in cell division 1)

Identity

Other aliasFAM44B
HGNC (Hugo) BOD1
LocusID (NCBI) 91272
Atlas_Id 57361
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173607145 and ends at 173616663 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BOD1 (5q35.2) / BOD1 (5q35.2)BOD1 (5q35.2) / DOCK2 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOD1   25114
Cards
Entrez_Gene (NCBI)BOD1  91272  biorientation of chromosomes in cell division 1
AliasesFAM44B
GeneCards (Weizmann)BOD1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:173607145-173616663 [Contig_View]  BOD1 [Vega]
TCGA cBioPortalBOD1
AceView (NCBI)BOD1
Genatlas (Paris)BOD1
WikiGenes91272
SOURCE (Princeton)BOD1
Genetics Home Reference (NIH)BOD1
Genomic and cartography
GoldenPath hg38 (UCSC)BOD1  -     chr5:173607145-173616663 -  5q35.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BOD1  -     5q35.2   [Description]    (hg19-Feb_2009)
EnsemblBOD1 - 5q35.2 [CytoView hg19]  BOD1 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIBOD1 [Mapview hg19]  BOD1 [Mapview hg38]
OMIM616745   
Gene and transcription
Genbank (Entrez)AK301982 AY303777 BC003114 BC007436 BQ881883
RefSeq transcript (Entrez)NM_001159651 NM_138369
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BOD1
Cluster EST : UnigeneHs.425091 [ NCBI ]
CGAP (NCI)Hs.425091
Gene ExpressionBOD1 [ NCBI-GEO ]   BOD1 [ EBI - ARRAY_EXPRESS ]   BOD1 [ SEEK ]   BOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)BOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91272
GTEX Portal (Tissue expression)BOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IK1
Splice isoforms : SwissVarQ96IK1
PhosPhoSitePlusQ96IK1
Domains : Interpro (EBI)Bod1-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BOD1
DMDM Disease mutations91272
Blocks (Seattle)BOD1
SuperfamilyQ96IK1
Peptide AtlasQ96IK1
IPIIPI00063667   IPI00165403   IPI00945627   IPI00946798   IPI00946282   
Protein Interaction databases
DIP (DOE-UCLA)Q96IK1
IntAct (EBI)Q96IK1
BioGRIDBOD1
STRING (EMBL)BOD1
ZODIACBOD1
Ontologies - Pathways
QuickGOQ96IK1
Ontology : AmiGOspindle pole  condensed chromosome outer kinetochore  protein phosphatase inhibitor activity  cytoplasm  centrosome  spindle microtubule  mitotic metaphase plate congression  negative regulation of phosphoprotein phosphatase activity  cell division  protein phosphatase 2A binding  protein localization to chromosome, centromeric region  mitotic sister chromatid cohesion, centromeric  mitotic sister chromatid biorientation  
Ontology : EGO-EBIspindle pole  condensed chromosome outer kinetochore  protein phosphatase inhibitor activity  cytoplasm  centrosome  spindle microtubule  mitotic metaphase plate congression  negative regulation of phosphoprotein phosphatase activity  cell division  protein phosphatase 2A binding  protein localization to chromosome, centromeric region  mitotic sister chromatid cohesion, centromeric  mitotic sister chromatid biorientation  
NDEx NetworkBOD1
Atlas of Cancer Signalling NetworkBOD1
Wikipedia pathwaysBOD1
Orthology - Evolution
OrthoDB91272
Phylogenetic Trees/Animal Genes : TreeFamBOD1
HOVERGENQ96IK1
HOGENOMQ96IK1
Homologs : HomoloGeneBOD1
Homology/Alignments : Family Browser (UCSC)BOD1
Gene fusions - Rearrangements
Fusion : QuiverBOD1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOD1
dbVarBOD1
ClinVarBOD1
1000_GenomesBOD1 
Exome Variant ServerBOD1
Varsome BrowserBOD1
Genetic variants : HAPMAP91272
Genomic Variants (DGV)BOD1 [DGVbeta]
DECIPHERBOD1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBOD1 
Mutations
ICGC Data PortalBOD1 
TCGA Data PortalBOD1 
Broad Tumor PortalBOD1
OASIS PortalBOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBOD1
BioMutasearch BOD1
DgiDB (Drug Gene Interaction Database)BOD1
DoCM (Curated mutations)BOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOD1 (select a term)
intoGenBOD1
Cancer3DBOD1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616745   
Orphanet
DisGeNETBOD1
MedgenBOD1
Genetic Testing Registry BOD1
NextProtQ96IK1 [Medical]
TSGene91272
GENETestsBOD1
Target ValidationBOD1
Huge Navigator BOD1 [HugePedia]
snp3D : Map Gene to Disease91272
BioCentury BCIQBOD1
ClinGenBOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91272
Chemical/Pharm GKB GenePA164716651
Clinical trialBOD1
Miscellaneous
canSAR (ICR)BOD1 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOD1
EVEXBOD1
GoPubMedBOD1
iHOPBOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Aug 27 11:11:46 CEST 2018

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