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BOD1 (biorientation of chromosomes in cell division 1)

Identity

Alias_namesFAM44B
family with sequence similarity 44, member B
Other alias
HGNC (Hugo) BOD1
LocusID (NCBI) 91272
Atlas_Id 60779
Location 5q35.2  [Link to chromosome band 5q35]
Location_base_pair Starts at 173034148 and ends at 173043666 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BOD1 (5q35.2) / BOD1 (5q35.2)BOD1 (5q35.2) / DOCK2 (5q35.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOD1   25114
Cards
Entrez_Gene (NCBI)BOD1  91272  biorientation of chromosomes in cell division 1
AliasesFAM44B
GeneCards (Weizmann)BOD1
Ensembl hg19 (Hinxton)ENSG00000145919 [Gene_View]  chr5:173034148-173043666 [Contig_View]  BOD1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000145919 [Gene_View]  chr5:173034148-173043666 [Contig_View]  BOD1 [Vega]
ICGC DataPortalENSG00000145919
TCGA cBioPortalBOD1
AceView (NCBI)BOD1
Genatlas (Paris)BOD1
WikiGenes91272
SOURCE (Princeton)BOD1
Genetics Home Reference (NIH)BOD1
Genomic and cartography
GoldenPath hg19 (UCSC)BOD1  -     chr5:173034148-173043666 -  5q35.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BOD1  -     5q35.2   [Description]    (hg38-Dec_2013)
EnsemblBOD1 - 5q35.2 [CytoView hg19]  BOD1 - 5q35.2 [CytoView hg38]
Mapping of homologs : NCBIBOD1 [Mapview hg19]  BOD1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301982 AY303777 BC003114 BC007436 BQ881883
RefSeq transcript (Entrez)NM_001159651 NM_138369
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_023133 NW_004929325
Consensus coding sequences : CCDS (NCBI)BOD1
Cluster EST : UnigeneHs.425091 [ NCBI ]
CGAP (NCI)Hs.425091
Alternative Splicing GalleryENSG00000145919
Gene ExpressionBOD1 [ NCBI-GEO ]   BOD1 [ EBI - ARRAY_EXPRESS ]   BOD1 [ SEEK ]   BOD1 [ MEM ]
Gene Expression Viewer (FireBrowse)BOD1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91272
GTEX Portal (Tissue expression)BOD1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96IK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96IK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96IK1
Splice isoforms : SwissVarQ96IK1
PhosPhoSitePlusQ96IK1
Domains : Interpro (EBI)Bod1_like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BOD1
DMDM Disease mutations91272
Blocks (Seattle)BOD1
SuperfamilyQ96IK1
Human Protein AtlasENSG00000145919
Peptide AtlasQ96IK1
HPRD13309
IPIIPI00063667   IPI00165403   IPI00945627   IPI00946798   IPI00946282   
Protein Interaction databases
DIP (DOE-UCLA)Q96IK1
IntAct (EBI)Q96IK1
FunCoupENSG00000145919
BioGRIDBOD1
STRING (EMBL)BOD1
ZODIACBOD1
Ontologies - Pathways
QuickGOQ96IK1
Ontology : AmiGOcondensed chromosome kinetochore  cytoplasm  microtubule organizing center  mitotic nuclear division  cell division  
Ontology : EGO-EBIcondensed chromosome kinetochore  cytoplasm  microtubule organizing center  mitotic nuclear division  cell division  
NDEx NetworkBOD1
Atlas of Cancer Signalling NetworkBOD1
Wikipedia pathwaysBOD1
Orthology - Evolution
OrthoDB91272
GeneTree (enSembl)ENSG00000145919
Phylogenetic Trees/Animal Genes : TreeFamBOD1
HOVERGENQ96IK1
HOGENOMQ96IK1
Homologs : HomoloGeneBOD1
Homology/Alignments : Family Browser (UCSC)BOD1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOD1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOD1
dbVarBOD1
ClinVarBOD1
1000_GenomesBOD1 
Exome Variant ServerBOD1
ExAC (Exome Aggregation Consortium)BOD1 (select the gene name)
Genetic variants : HAPMAP91272
Genomic Variants (DGV)BOD1 [DGVbeta]
DECIPHER (Syndromes)5:173034148-173043666  ENSG00000145919
CONAN: Copy Number AnalysisBOD1 
Mutations
ICGC Data PortalBOD1 
TCGA Data PortalBOD1 
Broad Tumor PortalBOD1
OASIS PortalBOD1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBOD1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBOD1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BOD1
DgiDB (Drug Gene Interaction Database)BOD1
DoCM (Curated mutations)BOD1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOD1 (select a term)
intoGenBOD1
Cancer3DBOD1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenBOD1
Genetic Testing Registry BOD1
NextProtQ96IK1 [Medical]
TSGene91272
GENETestsBOD1
Huge Navigator BOD1 [HugePedia]
snp3D : Map Gene to Disease91272
BioCentury BCIQBOD1
ClinGenBOD1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91272
Chemical/Pharm GKB GenePA164716651
Clinical trialBOD1
Miscellaneous
canSAR (ICR)BOD1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOD1
EVEXBOD1
GoPubMedBOD1
iHOPBOD1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:56 CET 2017

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