Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

BOD1L1 (biorientation of chromosomes in cell division 1 like 1)

Identity

Alias_namesFAM44A
BOD1L
family with sequence similarity 44, member A
biorientation of chromosomes in cell division 1-like
Alias_symbol (synonym)FLJ33215
KIAA1327
Other alias
HGNC (Hugo) BOD1L1
LocusID (NCBI) 259282
Atlas_Id 55496
Location 4p15.33  [Link to chromosome band 4p15]
Location_base_pair Starts at 13568742 and ends at 13627704 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPLP2 (11p15.5) / BOD1L1 (4p15.33)TMEM11 (17p11.2) / BOD1L1 (4p15.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOD1L1   31792
Cards
Entrez_Gene (NCBI)BOD1L1  259282  biorientation of chromosomes in cell division 1 like 1
AliasesBOD1L; FAM44A
GeneCards (Weizmann)BOD1L1
Ensembl hg19 (Hinxton)ENSG00000038219 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000038219 [Gene_View]  chr4:13568742-13627704 [Contig_View]  BOD1L1 [Vega]
ICGC DataPortalENSG00000038219
TCGA cBioPortalBOD1L1
AceView (NCBI)BOD1L1
Genatlas (Paris)BOD1L1
WikiGenes259282
SOURCE (Princeton)BOD1L1
Genetics Home Reference (NIH)BOD1L1
Genomic and cartography
GoldenPath hg38 (UCSC)BOD1L1  -     chr4:13568742-13627704 -  4p15.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BOD1L1  -     4p15.33   [Description]    (hg19-Feb_2009)
EnsemblBOD1L1 - 4p15.33 [CytoView hg19]  BOD1L1 - 4p15.33 [CytoView hg38]
Mapping of homologs : NCBIBOD1L1 [Mapview hg19]  BOD1L1 [Mapview hg38]
OMIM616746   
Gene and transcription
Genbank (Entrez)AB037748 AF528529 AK025361 AK025965 AK090534
RefSeq transcript (Entrez)NM_148894
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BOD1L1
Cluster EST : UnigeneHs.744935 [ NCBI ]
CGAP (NCI)Hs.744935
Alternative Splicing GalleryENSG00000038219
Gene ExpressionBOD1L1 [ NCBI-GEO ]   BOD1L1 [ EBI - ARRAY_EXPRESS ]   BOD1L1 [ SEEK ]   BOD1L1 [ MEM ]
Gene Expression Viewer (FireBrowse)BOD1L1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259282
GTEX Portal (Tissue expression)BOD1L1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFC6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NFC6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NFC6
Splice isoforms : SwissVarQ8NFC6
PhosPhoSitePlusQ8NFC6
Domains : Interpro (EBI)Bod1-like   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BOD1L1
DMDM Disease mutations259282
Blocks (Seattle)BOD1L1
SuperfamilyQ8NFC6
Human Protein AtlasENSG00000038219
Peptide AtlasQ8NFC6
HPRD08156
IPIIPI00797574   IPI00945167   IPI00964077   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFC6
IntAct (EBI)Q8NFC6
FunCoupENSG00000038219
BioGRIDBOD1L1
STRING (EMBL)BOD1L1
ZODIACBOD1L1
Ontologies - Pathways
QuickGOQ8NFC6
Ontology : AmiGOnucleoplasm  chromosome  DNA repair  cellular response to DNA damage stimulus  replication fork processing  
Ontology : EGO-EBInucleoplasm  chromosome  DNA repair  cellular response to DNA damage stimulus  replication fork processing  
NDEx NetworkBOD1L1
Atlas of Cancer Signalling NetworkBOD1L1
Wikipedia pathwaysBOD1L1
Orthology - Evolution
OrthoDB259282
GeneTree (enSembl)ENSG00000038219
Phylogenetic Trees/Animal Genes : TreeFamBOD1L1
HOVERGENQ8NFC6
HOGENOMQ8NFC6
Homologs : HomoloGeneBOD1L1
Homology/Alignments : Family Browser (UCSC)BOD1L1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOD1L1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOD1L1
dbVarBOD1L1
ClinVarBOD1L1
1000_GenomesBOD1L1 
Exome Variant ServerBOD1L1
ExAC (Exome Aggregation Consortium)BOD1L1 (select the gene name)
Genetic variants : HAPMAP259282
Genomic Variants (DGV)BOD1L1 [DGVbeta]
DECIPHERBOD1L1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBOD1L1 
Mutations
ICGC Data PortalBOD1L1 
TCGA Data PortalBOD1L1 
Broad Tumor PortalBOD1L1
OASIS PortalBOD1L1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBOD1L1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BOD1L1
DgiDB (Drug Gene Interaction Database)BOD1L1
DoCM (Curated mutations)BOD1L1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOD1L1 (select a term)
intoGenBOD1L1
Cancer3DBOD1L1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616746   
Orphanet
MedgenBOD1L1
Genetic Testing Registry BOD1L1
NextProtQ8NFC6 [Medical]
TSGene259282
GENETestsBOD1L1
Target ValidationBOD1L1
Huge Navigator BOD1L1 [HugePedia]
snp3D : Map Gene to Disease259282
BioCentury BCIQBOD1L1
ClinGenBOD1L1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD259282
Chemical/Pharm GKB GenePA164716652
Clinical trialBOD1L1
Miscellaneous
canSAR (ICR)BOD1L1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOD1L1
EVEXBOD1L1
GoPubMedBOD1L1
iHOPBOD1L1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 25 18:59:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.