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BOLA2B (bolA family member 2B)

Identity

Alias_namesbolA-like 2B (E. coli)
bolA homolog 2B (E. coli)
Other aliasBOLA2
HGNC (Hugo) BOLA2B
LocusID (NCBI) 654483
Atlas_Id 60785
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 29453588 and ends at 29454964 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOLA2B   32479
Cards
Entrez_Gene (NCBI)BOLA2B  654483  bolA family member 2B
AliasesBOLA2
GeneCards (Weizmann)BOLA2B
Ensembl hg19 (Hinxton)ENSG00000169627 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169627 [Gene_View]  chr16:29453588-29454964 [Contig_View]  BOLA2B [Vega]
ICGC DataPortalENSG00000169627
TCGA cBioPortalBOLA2B
AceView (NCBI)BOLA2B
Genatlas (Paris)BOLA2B
WikiGenes654483
SOURCE (Princeton)BOLA2B
Genetics Home Reference (NIH)BOLA2B
Genomic and cartography
GoldenPath hg38 (UCSC)BOLA2B  -     chr16:29453588-29454964 -  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BOLA2B  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblBOLA2B - 16p11.2 [CytoView hg19]  BOLA2B - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIBOLA2B [Mapview hg19]  BOLA2B [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC137532 BC137534 BC148564 BC153144 BU960186
RefSeq transcript (Entrez)NM_001039182 NM_001320607
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BOLA2B
Cluster EST : UnigeneHs.647333 [ NCBI ]
CGAP (NCI)Hs.647333
Alternative Splicing GalleryENSG00000169627
Gene ExpressionBOLA2B [ NCBI-GEO ]   BOLA2B [ EBI - ARRAY_EXPRESS ]   BOLA2B [ SEEK ]   BOLA2B [ MEM ]
Gene Expression Viewer (FireBrowse)BOLA2B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)654483
GTEX Portal (Tissue expression)BOLA2B
Human Protein AtlasENSG00000169627-BOLA2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H3K6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H3K6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H3K6
Splice isoforms : SwissVarQ9H3K6
PhosPhoSitePlusQ9H3K6
Domains : Interpro (EBI)BolA   
Domain families : Pfam (Sanger)BolA (PF01722)   
Domain families : Pfam (NCBI)pfam01722   
Conserved Domain (NCBI)BOLA2B
DMDM Disease mutations654483
Blocks (Seattle)BOLA2B
SuperfamilyQ9H3K6
Human Protein Atlas [tissue]ENSG00000169627-BOLA2B [tissue]
Peptide AtlasQ9H3K6
Protein Interaction databases
DIP (DOE-UCLA)Q9H3K6
IntAct (EBI)Q9H3K6
FunCoupENSG00000169627
BioGRIDBOLA2B
STRING (EMBL)BOLA2B
ZODIACBOLA2B
Ontologies - Pathways
QuickGOQ9H3K6
Ontology : AmiGOprotein binding  nucleus  cytoplasm  [2Fe-2S] cluster assembly  extracellular exosome  protein maturation by iron-sulfur cluster transfer  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  [2Fe-2S] cluster assembly  extracellular exosome  protein maturation by iron-sulfur cluster transfer  
NDEx NetworkBOLA2B
Atlas of Cancer Signalling NetworkBOLA2B
Wikipedia pathwaysBOLA2B
Orthology - Evolution
OrthoDB654483
GeneTree (enSembl)ENSG00000169627
Phylogenetic Trees/Animal Genes : TreeFamBOLA2B
HOVERGENQ9H3K6
HOGENOMQ9H3K6
Homologs : HomoloGeneBOLA2B
Homology/Alignments : Family Browser (UCSC)BOLA2B
Gene fusions - Rearrangements
Tumor Fusion PortalBOLA2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOLA2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOLA2B
dbVarBOLA2B
ClinVarBOLA2B
1000_GenomesBOLA2B 
Exome Variant ServerBOLA2B
ExAC (Exome Aggregation Consortium)ENSG00000169627
GNOMAD BrowserENSG00000169627
Genetic variants : HAPMAP654483
Genomic Variants (DGV)BOLA2B [DGVbeta]
DECIPHERBOLA2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBOLA2B 
Mutations
ICGC Data PortalBOLA2B 
TCGA Data PortalBOLA2B 
Broad Tumor PortalBOLA2B
OASIS PortalBOLA2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBOLA2B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBOLA2B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch BOLA2B
DgiDB (Drug Gene Interaction Database)BOLA2B
DoCM (Curated mutations)BOLA2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOLA2B (select a term)
intoGenBOLA2B
Cancer3DBOLA2B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBOLA2B
MedgenBOLA2B
Genetic Testing Registry BOLA2B
NextProtQ9H3K6 [Medical]
TSGene654483
GENETestsBOLA2B
Target ValidationBOLA2B
Huge Navigator BOLA2B [HugePedia]snp3D : Map Gene to Disease654483
BioCentury BCIQBOLA2B
ClinGenBOLA2B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654483
Chemical/Pharm GKB GenePA143485317
Clinical trialBOLA2B
Miscellaneous
canSAR (ICR)BOLA2B (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOLA2B
EVEXBOLA2B
GoPubMedBOLA2B
iHOPBOLA2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:32:52 CET 2017

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