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BOLA3 (bolA family member 3)

Identity

Alias_namesbolA-like 3 (E. coli)
bolA homolog 3 (E. coli)
Other aliasMMDS2
HGNC (Hugo) BOLA3
LocusID (NCBI) 388962
Atlas_Id 56328
Location 2p13.1  [Link to chromosome band 2p13]
Location_base_pair Starts at 74135401 and ends at 74147912 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BOLA3 (2p13.1) / USP22 (17p11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BOLA3   24415
Cards
Entrez_Gene (NCBI)BOLA3  388962  bolA family member 3
AliasesMMDS2
GeneCards (Weizmann)BOLA3
Ensembl hg19 (Hinxton)ENSG00000163170 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163170 [Gene_View]  chr2:74135401-74147912 [Contig_View]  BOLA3 [Vega]
ICGC DataPortalENSG00000163170
TCGA cBioPortalBOLA3
AceView (NCBI)BOLA3
Genatlas (Paris)BOLA3
WikiGenes388962
SOURCE (Princeton)BOLA3
Genetics Home Reference (NIH)BOLA3
Genomic and cartography
GoldenPath hg38 (UCSC)BOLA3  -     chr2:74135401-74147912 -  2p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BOLA3  -     2p13.1   [Description]    (hg19-Feb_2009)
EnsemblBOLA3 - 2p13.1 [CytoView hg19]  BOLA3 - 2p13.1 [CytoView hg38]
Mapping of homologs : NCBIBOLA3 [Mapview hg19]  BOLA3 [Mapview hg38]
OMIM613183   614299   
Gene and transcription
Genbank (Entrez)AI652095 BC017744 BC028282 BC042036 BC046531
RefSeq transcript (Entrez)NM_001035505 NM_212552
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BOLA3
Cluster EST : UnigeneHs.61472 [ NCBI ]
CGAP (NCI)Hs.61472
Alternative Splicing GalleryENSG00000163170
Gene ExpressionBOLA3 [ NCBI-GEO ]   BOLA3 [ EBI - ARRAY_EXPRESS ]   BOLA3 [ SEEK ]   BOLA3 [ MEM ]
Gene Expression Viewer (FireBrowse)BOLA3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)388962
GTEX Portal (Tissue expression)BOLA3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ53S33   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ53S33  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ53S33
Splice isoforms : SwissVarQ53S33
PhosPhoSitePlusQ53S33
Domains : Interpro (EBI)BolA   
Domain families : Pfam (Sanger)BolA (PF01722)   
Domain families : Pfam (NCBI)pfam01722   
Conserved Domain (NCBI)BOLA3
DMDM Disease mutations388962
Blocks (Seattle)BOLA3
PDB (SRS)2NCL   
PDB (PDBSum)2NCL   
PDB (IMB)2NCL   
PDB (RSDB)2NCL   
Structural Biology KnowledgeBase2NCL   
SCOP (Structural Classification of Proteins)2NCL   
CATH (Classification of proteins structures)2NCL   
SuperfamilyQ53S33
Human Protein AtlasENSG00000163170
Peptide AtlasQ53S33
HPRD14209
IPIIPI00412229   IPI00175053   
Protein Interaction databases
DIP (DOE-UCLA)Q53S33
IntAct (EBI)Q53S33
FunCoupENSG00000163170
BioGRIDBOLA3
STRING (EMBL)BOLA3
ZODIACBOLA3
Ontologies - Pathways
QuickGOQ53S33
Ontology : AmiGOmolecular_function  cellular_component  mitochondrion  biological_process  
Ontology : EGO-EBImolecular_function  cellular_component  mitochondrion  biological_process  
NDEx NetworkBOLA3
Atlas of Cancer Signalling NetworkBOLA3
Wikipedia pathwaysBOLA3
Orthology - Evolution
OrthoDB388962
GeneTree (enSembl)ENSG00000163170
Phylogenetic Trees/Animal Genes : TreeFamBOLA3
HOVERGENQ53S33
HOGENOMQ53S33
Homologs : HomoloGeneBOLA3
Homology/Alignments : Family Browser (UCSC)BOLA3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBOLA3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BOLA3
dbVarBOLA3
ClinVarBOLA3
1000_GenomesBOLA3 
Exome Variant ServerBOLA3
ExAC (Exome Aggregation Consortium)BOLA3 (select the gene name)
Genetic variants : HAPMAP388962
Genomic Variants (DGV)BOLA3 [DGVbeta]
DECIPHERBOLA3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBOLA3 
Mutations
ICGC Data PortalBOLA3 
TCGA Data PortalBOLA3 
Broad Tumor PortalBOLA3
OASIS PortalBOLA3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBOLA3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBOLA3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch BOLA3
DgiDB (Drug Gene Interaction Database)BOLA3
DoCM (Curated mutations)BOLA3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BOLA3 (select a term)
intoGenBOLA3
Cancer3DBOLA3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613183    614299   
Orphanet22846   
MedgenBOLA3
Genetic Testing Registry BOLA3
NextProtQ53S33 [Medical]
TSGene388962
GENETestsBOLA3
Huge Navigator BOLA3 [HugePedia]
snp3D : Map Gene to Disease388962
BioCentury BCIQBOLA3
ClinGenBOLA3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388962
Chemical/Pharm GKB GenePA142672554
Clinical trialBOLA3
Miscellaneous
canSAR (ICR)BOLA3 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBOLA3
EVEXBOLA3
GoPubMedBOLA3
iHOPBOLA3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:07:56 CEST 2017

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