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BORCS5 (BLOC-1 related complex subunit 5)

Identity

Alias_namesLOH12CR1
loss of heterozygosity, 12, chromosomal region 1
Alias_symbol (synonym)LOH1CR12
Other alias
HGNC (Hugo) BORCS5
LocusID (NCBI) 118426
Atlas_Id 77726
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 12357079 and ends at 12471221 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BORCS5 (12p13.2) / ORAOV1 (11q13.3)BORCS5 (12p13.2) / PTPRR (12q15)CTNNA3 (10q21.3) / BORCS5 (12p13.2)
DUSP16 (12p13.2) / BORCS5 (12p13.2)ETV6 (12p13.2) / BORCS5 (12p13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BORCS5   17950
Cards
Entrez_Gene (NCBI)BORCS5  118426  BLOC-1 related complex subunit 5
AliasesLOH12CR1; LOH1CR12
GeneCards (Weizmann)BORCS5
Ensembl hg19 (Hinxton)ENSG00000165714 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165714 [Gene_View]  chr12:12357079-12471221 [Contig_View]  BORCS5 [Vega]
ICGC DataPortalENSG00000165714
TCGA cBioPortalBORCS5
AceView (NCBI)BORCS5
Genatlas (Paris)BORCS5
WikiGenes118426
SOURCE (Princeton)BORCS5
Genetics Home Reference (NIH)BORCS5
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS5  -     chr12:12357079-12471221 +  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS5  -     12p13.2   [Description]    (hg19-Feb_2009)
EnsemblBORCS5 - 12p13.2 [CytoView hg19]  BORCS5 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIBORCS5 [Mapview hg19]  BORCS5 [Mapview hg38]
OMIM616598   
Gene and transcription
Genbank (Entrez)AK075028 AW449789 AY037865 AY037866 BC013668
RefSeq transcript (Entrez)NM_001300742 NM_001330356 NM_058169
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BORCS5
Cluster EST : UnigeneHs.720779 [ NCBI ]
CGAP (NCI)Hs.720779
Alternative Splicing GalleryENSG00000165714
Gene ExpressionBORCS5 [ NCBI-GEO ]   BORCS5 [ EBI - ARRAY_EXPRESS ]   BORCS5 [ SEEK ]   BORCS5 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)118426
GTEX Portal (Tissue expression)BORCS5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969J3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969J3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969J3
Splice isoforms : SwissVarQ969J3
PhosPhoSitePlusQ969J3
Domains : Interpro (EBI)Tumour_suppressor_LOH1CR12   
Domain families : Pfam (Sanger)LOH1CR12 (PF10158)   
Domain families : Pfam (NCBI)pfam10158   
Conserved Domain (NCBI)BORCS5
DMDM Disease mutations118426
Blocks (Seattle)BORCS5
SuperfamilyQ969J3
Human Protein AtlasENSG00000165714
Peptide AtlasQ969J3
HPRD17439
IPIIPI00056386   IPI00163286   IPI01014619   
Protein Interaction databases
DIP (DOE-UCLA)Q969J3
IntAct (EBI)Q969J3
FunCoupENSG00000165714
BioGRIDBORCS5
STRING (EMBL)BORCS5
ZODIACBORCS5
Ontologies - Pathways
QuickGOQ969J3
Ontology : AmiGOprotein binding  lysosome  plus-end kinesin complex  intrinsic component of membrane  lysosome localization  organelle transport along microtubule  cytoplasmic side of lysosomal membrane  BORC complex  
Ontology : EGO-EBIprotein binding  lysosome  plus-end kinesin complex  intrinsic component of membrane  lysosome localization  organelle transport along microtubule  cytoplasmic side of lysosomal membrane  BORC complex  
NDEx NetworkBORCS5
Atlas of Cancer Signalling NetworkBORCS5
Wikipedia pathwaysBORCS5
Orthology - Evolution
OrthoDB118426
GeneTree (enSembl)ENSG00000165714
Phylogenetic Trees/Animal Genes : TreeFamBORCS5
HOVERGENQ969J3
HOGENOMQ969J3
Homologs : HomoloGeneBORCS5
Homology/Alignments : Family Browser (UCSC)BORCS5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS5
dbVarBORCS5
ClinVarBORCS5
1000_GenomesBORCS5 
Exome Variant ServerBORCS5
ExAC (Exome Aggregation Consortium)BORCS5 (select the gene name)
Genetic variants : HAPMAP118426
Genomic Variants (DGV)BORCS5 [DGVbeta]
DECIPHERBORCS5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS5 
Mutations
ICGC Data PortalBORCS5 
TCGA Data PortalBORCS5 
Broad Tumor PortalBORCS5
OASIS PortalBORCS5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBORCS5
BioMutasearch BORCS5
DgiDB (Drug Gene Interaction Database)BORCS5
DoCM (Curated mutations)BORCS5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BORCS5 (select a term)
intoGenBORCS5
Cancer3DBORCS5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616598   
Orphanet
MedgenBORCS5
Genetic Testing Registry BORCS5
NextProtQ969J3 [Medical]
TSGene118426
GENETestsBORCS5
Target ValidationBORCS5
Huge Navigator BORCS5 [HugePedia]
snp3D : Map Gene to Disease118426
BioCentury BCIQBORCS5
ClinGenBORCS5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118426
Chemical/Pharm GKB GenePA30421
Clinical trialBORCS5
Miscellaneous
canSAR (ICR)BORCS5 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS5
EVEXBORCS5
GoPubMedBORCS5
iHOPBORCS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:48 CEST 2017

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