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BORCS5 (BLOC-1 related complex subunit 5)

Identity

Alias_namesLOH12CR1
loss of heterozygosity, 12, chromosomal region 1
Alias_symbol (synonym)LOH1CR12
Other alias
HGNC (Hugo) BORCS5
LocusID (NCBI) 118426
Atlas_Id 77726
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 12510013 and ends at 12619838 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
BORCS5 (12p13.2) / ORAOV1 (11q13.3)BORCS5 (12p13.2) / PTPRR (12q15)CTNNA3 (10q21.3) / BORCS5 (12p13.2)
DUSP16 (12p13.2) / BORCS5 (12p13.2)ETV6 (12p13.2) / BORCS5 (12p13.2)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)BORCS5   17950
Cards
Entrez_Gene (NCBI)BORCS5  118426  BLOC-1 related complex subunit 5
AliasesLOH12CR1; LOH1CR12
GeneCards (Weizmann)BORCS5
Ensembl hg19 (Hinxton)ENSG00000165714 [Gene_View]  chr12:12510013-12619838 [Contig_View]  BORCS5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165714 [Gene_View]  chr12:12510013-12619838 [Contig_View]  BORCS5 [Vega]
ICGC DataPortalENSG00000165714
TCGA cBioPortalBORCS5
AceView (NCBI)BORCS5
Genatlas (Paris)BORCS5
WikiGenes118426
SOURCE (Princeton)BORCS5
Genetics Home Reference (NIH)BORCS5
Genomic and cartography
GoldenPath hg19 (UCSC)BORCS5  -     chr12:12510013-12619838 +  12p13.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)BORCS5  -     12p13.2   [Description]    (hg38-Dec_2013)
EnsemblBORCS5 - 12p13.2 [CytoView hg19]  BORCS5 - 12p13.2 [CytoView hg38]
Mapping of homologs : NCBIBORCS5 [Mapview hg19]  BORCS5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001300742 NM_058169
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_009714 NW_004929383 NW_011332696
Consensus coding sequences : CCDS (NCBI)BORCS5
Cluster EST : UnigeneHs.720779 [ NCBI ]
CGAP (NCI)Hs.720779
Alternative Splicing GalleryENSG00000165714
Gene ExpressionBORCS5 [ NCBI-GEO ]   BORCS5 [ EBI - ARRAY_EXPRESS ]   BORCS5 [ SEEK ]   BORCS5 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)118426
GTEX Portal (Tissue expression)BORCS5
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)BORCS5
DMDM Disease mutations118426
Blocks (Seattle)BORCS5
Human Protein AtlasENSG00000165714
HPRD17439
IPIIPI00056386   IPI00163286   IPI01014619   
Protein Interaction databases
FunCoupENSG00000165714
BioGRIDBORCS5
STRING (EMBL)BORCS5
ZODIACBORCS5
Ontologies - Pathways
Huge Navigator BORCS5 [HugePedia]
snp3D : Map Gene to Disease118426
BioCentury BCIQBORCS5
ClinGenBORCS5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD118426
Chemical/Pharm GKB GenePA30421
Clinical trialBORCS5
Miscellaneous
canSAR (ICR)BORCS5 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS5
EVEXBORCS5
GoPubMedBORCS5
iHOPBORCS5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:58 CET 2017

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