Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BORCS6 (BLOC-1 related complex subunit 6)

Identity

Alias_namesC17orf59
chromosome 17 open reading frame 59
Alias_symbol (synonym)FLJ20014
Other aliasPRO2472
HGNC (Hugo) BORCS6
LocusID (NCBI) 54785
Atlas_Id 77747
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 8188333 and ends at 8190246 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BORCS6   25939
Cards
Entrez_Gene (NCBI)BORCS6  54785  BLOC-1 related complex subunit 6
AliasesC17orf59; PRO2472
GeneCards (Weizmann)BORCS6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:8188333-8190246 [Contig_View]  BORCS6 [Vega]
TCGA cBioPortalBORCS6
AceView (NCBI)BORCS6
Genatlas (Paris)BORCS6
WikiGenes54785
SOURCE (Princeton)BORCS6
Genetics Home Reference (NIH)BORCS6
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS6  -     chr17:8188333-8190246 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS6  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblBORCS6 - 17p13.1 [CytoView hg19]  BORCS6 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIBORCS6 [Mapview hg19]  BORCS6 [Mapview hg38]
OMIM616599   
Gene and transcription
Genbank (Entrez)AI174760 AK000021 AK222506 BC009261 BC018880
RefSeq transcript (Entrez)NM_017622
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BORCS6
Cluster EST : UnigeneHs.129563 [ NCBI ]
CGAP (NCI)Hs.129563
Gene ExpressionBORCS6 [ NCBI-GEO ]   BORCS6 [ EBI - ARRAY_EXPRESS ]   BORCS6 [ SEEK ]   BORCS6 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54785
GTEX Portal (Tissue expression)BORCS6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96GS4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96GS4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96GS4
Splice isoforms : SwissVarQ96GS4
PhosPhoSitePlusQ96GS4
Domains : Interpro (EBI)BORCS6   
Domain families : Pfam (Sanger)DUF2365 (PF10157)   
Domain families : Pfam (NCBI)pfam10157   
Conserved Domain (NCBI)BORCS6
DMDM Disease mutations54785
Blocks (Seattle)BORCS6
SuperfamilyQ96GS4
Peptide AtlasQ96GS4
HPRD13368
IPIIPI00329748   IPI00009490   
Protein Interaction databases
DIP (DOE-UCLA)Q96GS4
IntAct (EBI)Q96GS4
BioGRIDBORCS6
STRING (EMBL)BORCS6
ZODIACBORCS6
Ontologies - Pathways
QuickGOQ96GS4
Ontology : AmiGOprotein binding  lysosome  lysosomal membrane  lysosome localization  BORC complex  
Ontology : EGO-EBIprotein binding  lysosome  lysosomal membrane  lysosome localization  BORC complex  
NDEx NetworkBORCS6
Atlas of Cancer Signalling NetworkBORCS6
Wikipedia pathwaysBORCS6
Orthology - Evolution
OrthoDB54785
Phylogenetic Trees/Animal Genes : TreeFamBORCS6
HOVERGENQ96GS4
HOGENOMQ96GS4
Homologs : HomoloGeneBORCS6
Homology/Alignments : Family Browser (UCSC)BORCS6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS6
dbVarBORCS6
ClinVarBORCS6
1000_GenomesBORCS6 
Exome Variant ServerBORCS6
ExAC (Exome Aggregation Consortium)BORCS6 (select the gene name)
Genetic variants : HAPMAP54785
Genomic Variants (DGV)BORCS6 [DGVbeta]
DECIPHERBORCS6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS6 
Mutations
ICGC Data PortalBORCS6 
TCGA Data PortalBORCS6 
Broad Tumor PortalBORCS6
OASIS PortalBORCS6 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBORCS6
BioMutasearch BORCS6
DgiDB (Drug Gene Interaction Database)BORCS6
DoCM (Curated mutations)BORCS6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BORCS6 (select a term)
intoGenBORCS6
Cancer3DBORCS6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616599   
Orphanet
MedgenBORCS6
Genetic Testing Registry BORCS6
NextProtQ96GS4 [Medical]
TSGene54785
GENETestsBORCS6
Target ValidationBORCS6
Huge Navigator BORCS6 [HugePedia]
snp3D : Map Gene to Disease54785
BioCentury BCIQBORCS6
ClinGenBORCS6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54785
Chemical/Pharm GKB GenePA142672242
Clinical trialBORCS6
Miscellaneous
canSAR (ICR)BORCS6 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS6
EVEXBORCS6
GoPubMedBORCS6
iHOPBORCS6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:48 CEST 2017

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