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BORCS7 (BLOC-1 related complex subunit 7)

Identity

Alias (NCBI)C10orf32
HGNC (Hugo) BORCS7
HGNC Alias symbFLJ40752
HGNC Alias namediaskedin
HGNC Previous nameC10orf32
HGNC Previous namechromosome 10 open reading frame 32
LocusID (NCBI) 119032
Atlas_Id 77723
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102854259 and ends at 102864961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
BORCS7 (10q24.32) / BORCS7 (10q24.32)BORCS7 (10q24.32) / CCL28 (5p12)BORCS7 (10q24.32) / TNS4 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)BORCS7   23516
Cards
Entrez_Gene (NCBI)BORCS7    BLOC-1 related complex subunit 7
AliasesC10orf32
GeneCards (Weizmann)BORCS7
Ensembl hg19 (Hinxton)ENSG00000166275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166275 [Gene_View]  ENSG00000166275 [Sequence]  chr10:102854259-102864961 [Contig_View]  BORCS7 [Vega]
ICGC DataPortalENSG00000166275
TCGA cBioPortalBORCS7
AceView (NCBI)BORCS7
Genatlas (Paris)BORCS7
SOURCE (Princeton)BORCS7
Genetics Home Reference (NIH)BORCS7
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS7  -     chr10:102854259-102864961 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS7  -     10q24.32   [Description]    (hg19-Feb_2009)
GoldenPathBORCS7 - 10q24.32 [CytoView hg19]  BORCS7 - 10q24.32 [CytoView hg38]
ImmunoBaseENSG00000166275
Genome Data Viewer NCBIBORCS7 [Mapview hg19]  
OMIM616600   
Gene and transcription
Genbank (Entrez)AA299084 AI147530 AK098071 AK311742 AL832477
RefSeq transcript (Entrez)NM_001136200 NM_144591
Consensus coding sequences : CCDS (NCBI)BORCS7
Gene ExpressionBORCS7 [ NCBI-GEO ]   BORCS7 [ EBI - ARRAY_EXPRESS ]   BORCS7 [ SEEK ]   BORCS7 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS7 [ Firebrowse - Broad ]
GenevisibleExpression of BORCS7 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119032
GTEX Portal (Tissue expression)BORCS7
Human Protein AtlasENSG00000166275-BORCS7 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B45
PhosPhoSitePlusQ96B45
Domains : Interpro (EBI)BORCS7   
Domain families : Pfam (Sanger)BORCS7 (PF16088)   
Domain families : Pfam (NCBI)pfam16088   
Conserved Domain (NCBI)BORCS7
SuperfamilyQ96B45
AlphaFold pdb e-kbQ96B45   
Human Protein Atlas [tissue]ENSG00000166275-BORCS7 [tissue]
HPRD12571
Protein Interaction databases
DIP (DOE-UCLA)Q96B45
IntAct (EBI)Q96B45
BioGRIDBORCS7
STRING (EMBL)BORCS7
ZODIACBORCS7
Ontologies - Pathways
QuickGOQ96B45
Ontology : AmiGOprotein binding  lysosomal membrane  BORC complex  BORC complex  
Ontology : EGO-EBIprotein binding  lysosomal membrane  BORC complex  BORC complex  
NDEx NetworkBORCS7
Atlas of Cancer Signalling NetworkBORCS7
Wikipedia pathwaysBORCS7
Orthology - Evolution
OrthoDB119032
GeneTree (enSembl)ENSG00000166275
Phylogenetic Trees/Animal Genes : TreeFamBORCS7
Homologs : HomoloGeneBORCS7
Homology/Alignments : Family Browser (UCSC)BORCS7
Gene fusions - Rearrangements
Fusion : QuiverBORCS7
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS7
dbVarBORCS7
ClinVarBORCS7
MonarchBORCS7
1000_GenomesBORCS7 
Exome Variant ServerBORCS7
GNOMAD BrowserENSG00000166275
Varsome BrowserBORCS7
ACMGBORCS7 variants
VarityQ96B45
Genomic Variants (DGV)BORCS7 [DGVbeta]
DECIPHERBORCS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS7 
Mutations
ICGC Data PortalBORCS7 
TCGA Data PortalBORCS7 
Broad Tumor PortalBORCS7
OASIS PortalBORCS7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBORCS7  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBORCS7
Mutations and Diseases : HGMDBORCS7
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaBORCS7
DgiDB (Drug Gene Interaction Database)BORCS7
DoCM (Curated mutations)BORCS7
CIViC (Clinical Interpretations of Variants in Cancer)BORCS7
Cancer3DBORCS7
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616600   
Orphanet
DisGeNETBORCS7
MedgenBORCS7
Genetic Testing Registry BORCS7
NextProtQ96B45 [Medical]
GENETestsBORCS7
Target ValidationBORCS7
Huge Navigator BORCS7 [HugePedia]
ClinGenBORCS7
Clinical trials, drugs, therapy
MyCancerGenomeBORCS7
Protein Interactions : CTDBORCS7
Pharm GKB GenePA134928831
PharosQ96B45
Clinical trialBORCS7
Miscellaneous
canSAR (ICR)BORCS7
HarmonizomeBORCS7
DataMed IndexBORCS7
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXBORCS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:43:28 CEST 2021

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