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BORCS7 (BLOC-1 related complex subunit 7)

Identity

Alias_namesC10orf32
chromosome 10 open reading frame 32
Alias_symbol (synonym)FLJ40752
Other alias
HGNC (Hugo) BORCS7
LocusID (NCBI) 119032
Atlas_Id 77723
Location 10q24.32  [Link to chromosome band 10q24]
Location_base_pair Starts at 102854210 and ends at 102864961 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BORCS7 (10q24.32) / BORCS7 (10q24.32)BORCS7 (10q24.32) / CCL28 (5p12)BORCS7 (10q24.32) / TNS4 (17q21.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BORCS7   23516
Cards
Entrez_Gene (NCBI)BORCS7  119032  BLOC-1 related complex subunit 7
AliasesC10orf32
GeneCards (Weizmann)BORCS7
Ensembl hg19 (Hinxton)ENSG00000166275 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000166275 [Gene_View]  chr10:102854210-102864961 [Contig_View]  BORCS7 [Vega]
ICGC DataPortalENSG00000166275
TCGA cBioPortalBORCS7
AceView (NCBI)BORCS7
Genatlas (Paris)BORCS7
WikiGenes119032
SOURCE (Princeton)BORCS7
Genetics Home Reference (NIH)BORCS7
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS7  -     chr10:102854210-102864961 +  10q24.32   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS7  -     10q24.32   [Description]    (hg19-Feb_2009)
EnsemblBORCS7 - 10q24.32 [CytoView hg19]  BORCS7 - 10q24.32 [CytoView hg38]
Mapping of homologs : NCBIBORCS7 [Mapview hg19]  BORCS7 [Mapview hg38]
OMIM616600   
Gene and transcription
Genbank (Entrez)AA299084 AI147530 AK098071 AK311742 AL832477
RefSeq transcript (Entrez)NM_001136200 NM_144591
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BORCS7
Cluster EST : UnigeneHs.34492 [ NCBI ]
CGAP (NCI)Hs.34492
Alternative Splicing GalleryENSG00000166275
Gene ExpressionBORCS7 [ NCBI-GEO ]   BORCS7 [ EBI - ARRAY_EXPRESS ]   BORCS7 [ SEEK ]   BORCS7 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)119032
GTEX Portal (Tissue expression)BORCS7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B45   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B45  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B45
Splice isoforms : SwissVarQ96B45
PhosPhoSitePlusQ96B45
Domains : Interpro (EBI)BORCS7   
Domain families : Pfam (Sanger)UPF0693 (PF16088)   
Domain families : Pfam (NCBI)pfam16088   
Conserved Domain (NCBI)BORCS7
DMDM Disease mutations119032
Blocks (Seattle)BORCS7
SuperfamilyQ96B45
Human Protein AtlasENSG00000166275
Peptide AtlasQ96B45
HPRD12571
IPIIPI00303253   
Protein Interaction databases
DIP (DOE-UCLA)Q96B45
IntAct (EBI)Q96B45
FunCoupENSG00000166275
BioGRIDBORCS7
STRING (EMBL)BORCS7
ZODIACBORCS7
Ontologies - Pathways
QuickGOQ96B45
Ontology : AmiGOprotein binding  lysosome  lysosomal membrane  BORC complex  
Ontology : EGO-EBIprotein binding  lysosome  lysosomal membrane  BORC complex  
NDEx NetworkBORCS7
Atlas of Cancer Signalling NetworkBORCS7
Wikipedia pathwaysBORCS7
Orthology - Evolution
OrthoDB119032
GeneTree (enSembl)ENSG00000166275
Phylogenetic Trees/Animal Genes : TreeFamBORCS7
HOVERGENQ96B45
HOGENOMQ96B45
Homologs : HomoloGeneBORCS7
Homology/Alignments : Family Browser (UCSC)BORCS7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS7
dbVarBORCS7
ClinVarBORCS7
1000_GenomesBORCS7 
Exome Variant ServerBORCS7
ExAC (Exome Aggregation Consortium)BORCS7 (select the gene name)
Genetic variants : HAPMAP119032
Genomic Variants (DGV)BORCS7 [DGVbeta]
DECIPHERBORCS7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS7 
Mutations
ICGC Data PortalBORCS7 
TCGA Data PortalBORCS7 
Broad Tumor PortalBORCS7
OASIS PortalBORCS7 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBORCS7
BioMutasearch BORCS7
DgiDB (Drug Gene Interaction Database)BORCS7
DoCM (Curated mutations)BORCS7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BORCS7 (select a term)
intoGenBORCS7
Cancer3DBORCS7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616600   
Orphanet
MedgenBORCS7
Genetic Testing Registry BORCS7
NextProtQ96B45 [Medical]
TSGene119032
GENETestsBORCS7
Target ValidationBORCS7
Huge Navigator BORCS7 [HugePedia]
snp3D : Map Gene to Disease119032
BioCentury BCIQBORCS7
ClinGenBORCS7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD119032
Chemical/Pharm GKB GenePA134928831
Clinical trialBORCS7
Miscellaneous
canSAR (ICR)BORCS7 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS7
EVEXBORCS7
GoPubMedBORCS7
iHOPBORCS7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:48 CEST 2017

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