Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BORCS8-MEF2B (BORCS8-MEF2B readthrough)

Identity

Alias (NCBI)LOC729991-MEF2B
MEF2B
MEF2BNB-MEF2B
RSRFR2
HGNC (Hugo) BORCS8-MEF2B
HGNC Previous nameMEF2BNB-MEF2B
HGNC Previous nameMEF2BNB-MEF2B readthrough
LocusID (NCBI) 4207
Atlas_Id 78338
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19145567 and ends at 19192591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BORCS8-MEF2B   39979
Cards
Entrez_Gene (NCBI)BORCS8-MEF2B  4207  BORCS8-MEF2B readthrough
AliasesLOC729991-MEF2B; MEF2B; MEF2BNB-MEF2B; RSRFR2
GeneCards (Weizmann)BORCS8-MEF2B
Ensembl hg19 (Hinxton)ENSG00000213999 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213999 [Gene_View]  ENSG00000213999 [Sequence]  chr19:19145567-19192591 [Contig_View]  BORCS8-MEF2B [Vega]
ICGC DataPortalENSG00000213999
TCGA cBioPortalBORCS8-MEF2B
AceView (NCBI)BORCS8-MEF2B
Genatlas (Paris)BORCS8-MEF2B
WikiGenes4207
SOURCE (Princeton)BORCS8-MEF2B
Genetics Home Reference (NIH)BORCS8-MEF2B
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS8-MEF2B  -     chr19:19145567-19192591 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS8-MEF2B  -     19p13.11   [Description]    (hg19-Feb_2009)
GoldenPathBORCS8-MEF2B - 19p13.11 [CytoView hg19]  BORCS8-MEF2B - 19p13.11 [CytoView hg38]
ImmunoBaseENSG00000213999
genome Data Viewer NCBIBORCS8-MEF2B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK301086 AK316328 BC126245 BC136457 BC171767
RefSeq transcript (Entrez)NM_005919
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BORCS8-MEF2B
Alternative Splicing GalleryENSG00000213999
Gene ExpressionBORCS8-MEF2B [ NCBI-GEO ]   BORCS8-MEF2B [ EBI - ARRAY_EXPRESS ]   BORCS8-MEF2B [ SEEK ]   BORCS8-MEF2B [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS8-MEF2B [ Firebrowse - Broad ]
GenevisibleExpression of BORCS8-MEF2B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)4207
GTEX Portal (Tissue expression)BORCS8-MEF2B
Human Protein AtlasENSG00000213999-BORCS8-MEF2B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ02080   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ02080  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ02080
Splice isoforms : SwissVarQ02080
PhosPhoSitePlusQ02080
Domaine pattern : Prosite (Expaxy)MADS_BOX_1 (PS00350)    MADS_BOX_2 (PS50066)   
Domains : Interpro (EBI)MADS_MEF2-like    TF_MADSbox    TF_MADSbox_sf   
Domain families : Pfam (Sanger)SRF-TF (PF00319)   
Domain families : Pfam (NCBI)pfam00319   
Domain families : Smart (EMBL)MADS (SM00432)  
Conserved Domain (NCBI)BORCS8-MEF2B
DMDM Disease mutations4207
Blocks (Seattle)BORCS8-MEF2B
PDB (RSDB)1N6J    1TQE    6BYY    6BZ1    6C9L   
PDB Europe1N6J    1TQE    6BYY    6BZ1    6C9L   
PDB (PDBSum)1N6J    1TQE    6BYY    6BZ1    6C9L   
PDB (IMB)1N6J    1TQE    6BYY    6BZ1    6C9L   
Structural Biology KnowledgeBase1N6J    1TQE    6BYY    6BZ1    6C9L   
SCOP (Structural Classification of Proteins)1N6J    1TQE    6BYY    6BZ1    6C9L   
CATH (Classification of proteins structures)1N6J    1TQE    6BYY    6BZ1    6C9L   
SuperfamilyQ02080
Human Protein Atlas [tissue]ENSG00000213999-BORCS8-MEF2B [tissue]
Peptide AtlasQ02080
HPRD02808
Protein Interaction databases
DIP (DOE-UCLA)Q02080
IntAct (EBI)Q02080
FunCoupENSG00000213999
BioGRIDBORCS8-MEF2B
STRING (EMBL)BORCS8-MEF2B
ZODIACBORCS8-MEF2B
Ontologies - Pathways
QuickGOQ02080
Ontology : AmiGOnuclear chromatin  nuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleoplasm  transcription factor complex  cytosol  multicellular organism development  muscle organ development  transcription factor binding  cell junction  histone deacetylase binding  histone deacetylase binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription by RNA polymerase II  protein dimerization activity  
Ontology : EGO-EBInuclear chromatin  nuclear chromatin  RNA polymerase II regulatory region sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  RNA polymerase II proximal promoter sequence-specific DNA binding  DNA-binding transcription factor activity, RNA polymerase II-specific  DNA-binding transcription activator activity, RNA polymerase II-specific  DNA-binding transcription factor activity  nucleus  nucleoplasm  transcription factor complex  cytosol  multicellular organism development  muscle organ development  transcription factor binding  cell junction  histone deacetylase binding  histone deacetylase binding  sequence-specific DNA binding  transcription regulatory region DNA binding  positive regulation of transcription by RNA polymerase II  protein dimerization activity  
NDEx NetworkBORCS8-MEF2B
Atlas of Cancer Signalling NetworkBORCS8-MEF2B
Wikipedia pathwaysBORCS8-MEF2B
Orthology - Evolution
OrthoDB4207
GeneTree (enSembl)ENSG00000213999
Phylogenetic Trees/Animal Genes : TreeFamBORCS8-MEF2B
HOGENOMQ02080
Homologs : HomoloGeneBORCS8-MEF2B
Homology/Alignments : Family Browser (UCSC)BORCS8-MEF2B
Gene fusions - Rearrangements
Fusion : QuiverBORCS8-MEF2B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS8-MEF2B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS8-MEF2B
dbVarBORCS8-MEF2B
ClinVarBORCS8-MEF2B
1000_GenomesBORCS8-MEF2B 
Exome Variant ServerBORCS8-MEF2B
GNOMAD BrowserENSG00000213999
Varsome BrowserBORCS8-MEF2B
Genetic variants : HAPMAP4207
Genomic Variants (DGV)BORCS8-MEF2B [DGVbeta]
DECIPHERBORCS8-MEF2B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS8-MEF2B 
Mutations
ICGC Data PortalBORCS8-MEF2B 
TCGA Data PortalBORCS8-MEF2B 
Broad Tumor PortalBORCS8-MEF2B
OASIS PortalBORCS8-MEF2B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBORCS8-MEF2B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DBORCS8-MEF2B
Mutations and Diseases : HGMDBORCS8-MEF2B
BioMutasearch BORCS8-MEF2B
DgiDB (Drug Gene Interaction Database)BORCS8-MEF2B
DoCM (Curated mutations)BORCS8-MEF2B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BORCS8-MEF2B (select a term)
intoGenBORCS8-MEF2B
Cancer3DBORCS8-MEF2B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETBORCS8-MEF2B
MedgenBORCS8-MEF2B
Genetic Testing Registry BORCS8-MEF2B
NextProtQ02080 [Medical]
TSGene4207
GENETestsBORCS8-MEF2B
Target ValidationBORCS8-MEF2B
Huge Navigator BORCS8-MEF2B [HugePedia]
snp3D : Map Gene to Disease4207
BioCentury BCIQBORCS8-MEF2B
ClinGenBORCS8-MEF2B
Clinical trials, drugs, therapy
Protein Interactions : CTD4207
Clinical trialBORCS8-MEF2B
Miscellaneous
canSAR (ICR)BORCS8-MEF2B (select the gene name)
HarmonizomeBORCS8-MEF2B
DataMed IndexBORCS8-MEF2B
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS8-MEF2B
EVEXBORCS8-MEF2B
GoPubMedBORCS8-MEF2B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Aug 22 19:06:38 CEST 2020

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