Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BORCS8 (BLOC-1 related complex subunit 8)

Identity

Alias_namesMEF2BNB
MEF2B neighbor
Other alias
HGNC (Hugo) BORCS8
LocusID (NCBI) 729991
Atlas_Id 77754
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19181876 and ends at 19192591 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
BORCS8 (19p13.11) / MEF2B (19p13.11)MEF2B (19p13.11) / BORCS8 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BORCS8   37247
Cards
Entrez_Gene (NCBI)BORCS8  729991  BLOC-1 related complex subunit 8
AliasesMEF2BNB
GeneCards (Weizmann)BORCS8
Ensembl hg19 (Hinxton)ENSG00000064489 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000064489 [Gene_View]  chr19:19181876-19192591 [Contig_View]  BORCS8 [Vega]
ICGC DataPortalENSG00000064489
TCGA cBioPortalBORCS8
AceView (NCBI)BORCS8
Genatlas (Paris)BORCS8
WikiGenes729991
SOURCE (Princeton)BORCS8
Genetics Home Reference (NIH)BORCS8
Genomic and cartography
GoldenPath hg38 (UCSC)BORCS8  -     chr19:19181876-19192591 -  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BORCS8  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblBORCS8 - 19p13.11 [CytoView hg19]  BORCS8 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIBORCS8 [Mapview hg19]  BORCS8 [Mapview hg38]
OMIM616601   
Gene and transcription
Genbank (Entrez)AK057161 AK128256 BC000489 BC004449 BC010178
RefSeq transcript (Entrez)NM_001145783 NM_001145784
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BORCS8
Cluster EST : UnigeneHs.153629 [ NCBI ]
CGAP (NCI)Hs.153629
Alternative Splicing GalleryENSG00000064489
Gene ExpressionBORCS8 [ NCBI-GEO ]   BORCS8 [ EBI - ARRAY_EXPRESS ]   BORCS8 [ SEEK ]   BORCS8 [ MEM ]
Gene Expression Viewer (FireBrowse)BORCS8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)729991
GTEX Portal (Tissue expression)BORCS8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96FH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96FH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96FH0
Splice isoforms : SwissVarQ96FH0
PhosPhoSitePlusQ96FH0
Domains : Interpro (EBI)BORCS8   
Domain families : Pfam (Sanger)NEP (PF10167)   
Domain families : Pfam (NCBI)pfam10167   
Conserved Domain (NCBI)BORCS8
DMDM Disease mutations729991
Blocks (Seattle)BORCS8
SuperfamilyQ96FH0
Human Protein AtlasENSG00000064489
Peptide AtlasQ96FH0
IPIIPI00386642   IPI00816037   
Protein Interaction databases
DIP (DOE-UCLA)Q96FH0
IntAct (EBI)Q96FH0
FunCoupENSG00000064489
BioGRIDBORCS8
STRING (EMBL)BORCS8
ZODIACBORCS8
Ontologies - Pathways
QuickGOQ96FH0
Ontology : AmiGOprotein binding  lysosome  lysosomal membrane  heart development  BORC complex  
Ontology : EGO-EBIprotein binding  lysosome  lysosomal membrane  heart development  BORC complex  
NDEx NetworkBORCS8
Atlas of Cancer Signalling NetworkBORCS8
Wikipedia pathwaysBORCS8
Orthology - Evolution
OrthoDB729991
GeneTree (enSembl)ENSG00000064489
Phylogenetic Trees/Animal Genes : TreeFamBORCS8
HOVERGENQ96FH0
HOGENOMQ96FH0
Homologs : HomoloGeneBORCS8
Homology/Alignments : Family Browser (UCSC)BORCS8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBORCS8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BORCS8
dbVarBORCS8
ClinVarBORCS8
1000_GenomesBORCS8 
Exome Variant ServerBORCS8
ExAC (Exome Aggregation Consortium)BORCS8 (select the gene name)
Genetic variants : HAPMAP729991
Genomic Variants (DGV)BORCS8 [DGVbeta]
DECIPHERBORCS8 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBORCS8 
Mutations
ICGC Data PortalBORCS8 
TCGA Data PortalBORCS8 
Broad Tumor PortalBORCS8
OASIS PortalBORCS8 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDBORCS8
BioMutasearch BORCS8
DgiDB (Drug Gene Interaction Database)BORCS8
DoCM (Curated mutations)BORCS8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BORCS8 (select a term)
intoGenBORCS8
Cancer3DBORCS8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616601   
Orphanet
MedgenBORCS8
Genetic Testing Registry BORCS8
NextProtQ96FH0 [Medical]
TSGene729991
GENETestsBORCS8
Target ValidationBORCS8
Huge Navigator BORCS8 [HugePedia]
snp3D : Map Gene to Disease729991
BioCentury BCIQBORCS8
ClinGenBORCS8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD729991
Chemical/Pharm GKB GenePA166049028
Clinical trialBORCS8
Miscellaneous
canSAR (ICR)BORCS8 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBORCS8
EVEXBORCS8
GoPubMedBORCS8
iHOPBORCS8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:49 CEST 2017

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