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BPGM (bisphosphoglycerate mutase)

Identity

Alias_names2
Other aliasDPGM
HGNC (Hugo) BPGM
LocusID (NCBI) 669
Atlas_Id 46998
Location 7q33  [Link to chromosome band 7q33]
Location_base_pair Starts at 134646779 and ends at 134679815 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RASSF4 (10q11.21) / BPGM (7q33)TSC22D1 (13q14.11) / BPGM (7q33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)BPGM   1093
Cards
Entrez_Gene (NCBI)BPGM  669  bisphosphoglycerate mutase
AliasesDPGM
GeneCards (Weizmann)BPGM
Ensembl hg19 (Hinxton)ENSG00000172331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172331 [Gene_View]  chr7:134646779-134679815 [Contig_View]  BPGM [Vega]
ICGC DataPortalENSG00000172331
TCGA cBioPortalBPGM
AceView (NCBI)BPGM
Genatlas (Paris)BPGM
WikiGenes669
SOURCE (Princeton)BPGM
Genetics Home Reference (NIH)BPGM
Genomic and cartography
GoldenPath hg38 (UCSC)BPGM  -     chr7:134646779-134679815 +  7q33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)BPGM  -     7q33   [Description]    (hg19-Feb_2009)
EnsemblBPGM - 7q33 [CytoView hg19]  BPGM - 7q33 [CytoView hg38]
Mapping of homologs : NCBIBPGM [Mapview hg19]  BPGM [Mapview hg38]
OMIM222800   613896   
Gene and transcription
Genbank (Entrez)AB209044 AK097778 AK315439 BC017050 BM090687
RefSeq transcript (Entrez)NM_001293085 NM_001724 NM_199186
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)BPGM
Cluster EST : UnigeneHs.198365 [ NCBI ]
CGAP (NCI)Hs.198365
Alternative Splicing GalleryENSG00000172331
Gene ExpressionBPGM [ NCBI-GEO ]   BPGM [ EBI - ARRAY_EXPRESS ]   BPGM [ SEEK ]   BPGM [ MEM ]
Gene Expression Viewer (FireBrowse)BPGM [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)669
GTEX Portal (Tissue expression)BPGM
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07738   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07738  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07738
Splice isoforms : SwissVarP07738
PhosPhoSitePlusP07738
Domaine pattern : Prosite (Expaxy)PG_MUTASE (PS00175)   
Domains : Interpro (EBI)His_Pase_superF_clade-1    His_PPase_superfam    PG/BPGM_mutase_AS    Phosphogly_mut1   
Domain families : Pfam (Sanger)His_Phos_1 (PF00300)   
Domain families : Pfam (NCBI)pfam00300   
Domain families : Smart (EMBL)PGAM (SM00855)  
Conserved Domain (NCBI)BPGM
DMDM Disease mutations669
Blocks (Seattle)BPGM
PDB (SRS)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
PDB (PDBSum)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
PDB (IMB)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
PDB (RSDB)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
Structural Biology KnowledgeBase1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
SCOP (Structural Classification of Proteins)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
CATH (Classification of proteins structures)1T8P    2A9J    2F90    2H4X    2H4Z    2H52    2HHJ    3NFY   
SuperfamilyP07738
Human Protein AtlasENSG00000172331
Peptide AtlasP07738
HPRD01961
IPIIPI00215979   IPI00556284   
Protein Interaction databases
DIP (DOE-UCLA)P07738
IntAct (EBI)P07738
FunCoupENSG00000172331
BioGRIDBPGM
STRING (EMBL)BPGM
ZODIACBPGM
Ontologies - Pathways
QuickGOP07738
Ontology : AmiGObisphosphoglycerate mutase activity  cytosol  cytosol  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  glycolytic process  respiratory gaseous exchange  hydrolase activity  regulation of pentose-phosphate shunt  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  extracellular exosome  
Ontology : EGO-EBIbisphosphoglycerate mutase activity  cytosol  cytosol  carbohydrate metabolic process  glucose metabolic process  gluconeogenesis  glycolytic process  respiratory gaseous exchange  hydrolase activity  regulation of pentose-phosphate shunt  2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity  extracellular exosome  
Pathways : KEGGGlycolysis / Gluconeogenesis    Glycine, serine and threonine metabolism   
NDEx NetworkBPGM
Atlas of Cancer Signalling NetworkBPGM
Wikipedia pathwaysBPGM
Orthology - Evolution
OrthoDB669
GeneTree (enSembl)ENSG00000172331
Phylogenetic Trees/Animal Genes : TreeFamBPGM
HOVERGENP07738
HOGENOMP07738
Homologs : HomoloGeneBPGM
Homology/Alignments : Family Browser (UCSC)BPGM
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerBPGM [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)BPGM
dbVarBPGM
ClinVarBPGM
1000_GenomesBPGM 
Exome Variant ServerBPGM
ExAC (Exome Aggregation Consortium)BPGM (select the gene name)
Genetic variants : HAPMAP669
Genomic Variants (DGV)BPGM [DGVbeta]
DECIPHERBPGM [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisBPGM 
Mutations
ICGC Data PortalBPGM 
TCGA Data PortalBPGM 
Broad Tumor PortalBPGM
OASIS PortalBPGM [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICBPGM  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDBPGM
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)Mendelian genes
BioMutasearch BPGM
DgiDB (Drug Gene Interaction Database)BPGM
DoCM (Curated mutations)BPGM (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)BPGM (select a term)
intoGenBPGM
Cancer3DBPGM(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM222800    613896   
Orphanet3306   
MedgenBPGM
Genetic Testing Registry BPGM
NextProtP07738 [Medical]
TSGene669
GENETestsBPGM
Target ValidationBPGM
Huge Navigator BPGM [HugePedia]
snp3D : Map Gene to Disease669
BioCentury BCIQBPGM
ClinGenBPGM
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD669
Chemical/Pharm GKB GenePA25401
Clinical trialBPGM
Miscellaneous
canSAR (ICR)BPGM (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineBPGM
EVEXBPGM
GoPubMedBPGM
iHOPBPGM
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Jun 7 12:25:42 CEST 2017

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